Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g702 ATGTCTGAGGTTGACCTTCACCAGGAAGGTCAATGGATTGAATCTACATCTATTCTATCTTCTCTTTCCATGTTGCTCTTGGAGGATTGTGAACTCGATAACATGAGTCCATCTCTTGAGTATGTTAATTTTACATCTCTCACAGTCCTTTCTCTTTATGGGAATCATTTTAGTCATGAGATACCCAATTGGCTATCTAATCTCACCACTAATCTTTTAAAACTCGATCTACGTGACAATTCTCTAAAGGGTCATATACCCATCACCATTCTAGAGTTACGTTACTTAAATATTTTATATTTGTCAAGAAATCAATTGACAGGGCAAATACCGGAGTATTTAGGGCAACTCAAACATCTCGAAGCTCTTTCACTTAGATATAATTCCTTTGATGGTCCAATTCCTTCATCTCTAGGGAACCTATCATCCTTAAGGAGTTTATATTTGTATGGAAATAGGTTAAATGGAACTCTTCCAAGCAGTCTGTGGCTTCTTTCAAATTTGGAGGATTTAGAGATAGGAAATAACTCCTTATCAGGAATTGTGGACATAGCTCCAACATGGTTCTGGAAGTGGGCTTCACATATAGAATGGATCTATCTCTCTGATAACCAGATATCCGGGGATTTATCTGGAGTTTGGCTTAACAATACTATCATCTATTTGAACTCTAATTGCTTCACCGGTCTGTTACCTGCAGTGTCTCCAAATGTTACTTCTCTGACCCATGTAAACTTGGGAAACAACAACTTTTCGGGTAAAATTCCTGACTCCATAAGCTCTTTATTTTCACTCAAAGCATTGCACCTGCAGAATAATGGCTTATCTGGAAGCATACCCTCATCCTTGCGAGGGTGCACATCTTTGGGGCTCCTGGATTTAAAGCAAACAACGCTTACAAAGCATAGACATCCGGACAGCTTCCATAAATGCGTCCGCTCCACAATACATCCGGATAACCAACATGGGCTATCCGGATATGATTGCCCGGATCATTGA 999 39.64 MSEVDLHQEGQWIESTSILSSLSMLLLEDCELDNMSPSLEYVNFTSLTVLSLYGNHFSHEIPNWLSNLTTNLLKLDLRDNSLKGHIPITILELRYLNILYLSRNQLTGQIPEYLGQLKHLEALSLRYNSFDGPIPSSLGNLSSLRSLYLYGNRLNGTLPSSLWLLSNLEDLEIGNNSLSGIVDIAPTWFWKWASHIEWIYLSDNQISGDLSGVWLNNTIIYLNSNCFTGLLPAVSPNVTSLTHVNLGNNNFSGKIPDSISSLFSLKALHLQNNGLSGSIPSSLRGCTSLGLLDLKQTTLTKHRHPDSFHKCVRSTIHPDNQHGLSGYDCPDH* 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17473365 17494545 - Vvi16g702 Vvi16g702 778351

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g702 332 SMART LRR_typ_2 44 68 IPR003591 -
Vvi16g702 332 SMART LRR_typ_2 262 286 IPR003591 -
Vvi16g702 332 SMART LRR_typ_2 141 165 IPR003591 -
Vvi16g702 332 SMART LRR_typ_2 93 117 IPR003591 -
Vvi16g702 332 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515
Vvi16g702 332 Pfam Leucine Rich Repeat 46 68 IPR001611 GO:0005515
Vvi16g702 332 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 71 282 - -
Vvi16g702 332 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 7 182 - -
Vvi16g702 332 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 199 301 - -
Vvi16g702 332 Pfam Leucine rich repeat 71 129 IPR001611 GO:0005515
Vvi16g702 332 SUPERFAMILY L domain-like 19 304 - -
Vvi16g702 332 Gene3D Ribonuclease Inhibitor 4 320 IPR032675 -
Vvi16g702 332 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 7 182 - -
Vvi16g702 332 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 199 301 - -
Vvi16g702 332 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR 71 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g702 - - - vri:117933360 295.819
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g702 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018033 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6