Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g706 ATGGGAACTTCGGTACAGGTGACTCCACTGTGTGGGGTTTACAATGAAAACCCACTCTCTTACCTGGTATCTATCGATGGATTCAATTTCTTGGTCGATTGTGGATGGAACGATCACTTCGACCCAAGTTTTCTTCAACCCCTTGCCAGGGTGGCGTCGACTATAGATGCTGTTTTGCTAGCTCATCCAGATACACTTCATCTTGGTGCTCTACCATATGCCATGAAGCAACTTGGACTTTCTGCTCCTGTTTATTCAACAGAGCCTGTGTATAGATTAGGCCTCTTGACTATGTATGATCAATATCTCTCACGAAAGCAAGTTTCAGACTTTGATTTGTTTACCCTGGATGATATTGATTCTGCTTTCCAAAACGTGACCAGATTAACATACTCTCAAAATTATCATCTATTTGGCAAAGGAGAAGGAATTGTTATTGCTCCTCATGTTGCTGGGCATCTCTTGGGAGGTACTGTCTGGAAGATAACAAAAGATGGGGAAGATGTCATATATGCTGTTGACTTTAACCATCGCAAAGAAAGGCTTTTGAATGGAACTGTTTTAGAATCTTTTGTTCGGCCTGCTGTTTTAATAACAGATGCCTATAATGCTTTGAACAATCAGCCTTCTAGACGCCAAAGGGACCAAGAATTCCTAGATGTTATACTGAAGACTCTAAGAGGGGATGGAAATGTATTGCTACCTGTTGATACTGCTGGCCGAGTGTTGGAACTTATGCTAATATTGGAACAGTACTGGACACAGCATCATTTGAACTATCCCATCTTCTTTCTGACTTATGTTGCATCAAGCACAATCGACTATGTGAAGAGTTTCCTTGAGTGGATGAGTGATTCAATAGCCAAGTCTTTTGAACACACACGTGACAATGCCTTTCTTTTGAAACATGTCACACTTTTGATCAGCAAGAGTGAACTTGAGAAAGTTCCTGACGGTCCTAAGATTGTTCTAGCATCCATGGCCAGTTTGGAAGCGGGGTTCTCTCATGATATATTTGTTGAGTGGGCAACTGATGCAAAAAATCTTGTGCTGTTTAGCGAAAGAGGCCAGTTTGCCACGTTAGCCCGCATGCTTCAGGCGGATCCACCTCCTAAAGCTGTTAAAGTCACCATGTCCAAGAGGGTTCCTTTGGTTGGGGAGGAGTTAGCTGCTTATGAAGAAGAGCAGGAACGGATAAAAAAGGAGGAAGCTCTAAAAGCTAGTCTTAGCAAAGAGGACGAAATGAAAGCATCTCGTGGATCTGATAACAAATTGGGTGATCCAATGGTCATTGACACTACCACTCCTCCTGCTTCATCAGACGTGGCTGTCCCGCATGTTGGTGGGCACCGTGACATATTAATTGATGGGTTTGTTCCACCTTCTACTAGTGTTGCTCCAATGTTTCCATTTTATGAGAACTCCTCTGAGTGGGATGACTTTGGTGAAGTTATCAATCCAGAGGATTATGTAATCAAGGATGAAGACATGGACCAAGCAACCATGCAGGTTGGTGACGATCTGAATGGGAAACTTGATGAAGGCGCAGCTAGTTTGATATTTGATACAACGCCTTCAAAAGTTATATCTAATGAATTGACAGTGCAAGTGAAGTGTATGTTGGTTTACATGGATTTTGAGGGCCGTTCTGATGGCCGCTCAATTAAGTCCATTCTTTCTCATGTGGCTCCACTAAAGCTTGTTTTGGTGCATGGATCAGCAGAGGCGACCGAGCATTTGAAGCAACACTGCTTGAAACATGTTTGTCCCCATGTTTATGCTCCCCAAATTGGAGAAACAATTGACGTCACCTCAGATTTATGCGCTTACAAGGTCCAACTCTCTGAGAAGCTGATGAGCAATGTGCTATTTAAGAAGCTTGGAGACTATGAAGTAGCTTGGGTTGATGCAGAAGTCGGGAAGACGGAGAGCGGCTCACTGTCTTTGCTTCCTCTCTCAACCCCACCTCCATCACACGACACAGTCTTTGTTGGCGACATAAAAATGGCAGATTTCAAGCAGTTTCTGGCAAGCAAGGGCATCCAGGTCGAGTTCTCTGGTGGGGCATTGCGGTGTGGCGAGTATGTGACCTTGCGCAAGGTTGGTGATGCAAGCCAGAAGGGTGGTGGTGCCATAATTCAGCAAATTGTGATGGAAGGGCCCCTGTGTGACGAATATTATAAGATCAGGGAGTACTTGTATTCACAATATTACTTGCTTTGA 2223 43.86 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLVDCGWNDHFDPSFLQPLARVASTIDAVLLAHPDTLHLGALPYAMKQLGLSAPVYSTEPVYRLGLLTMYDQYLSRKQVSDFDLFTLDDIDSAFQNVTRLTYSQNYHLFGKGEGIVIAPHVAGHLLGGTVWKITKDGEDVIYAVDFNHRKERLLNGTVLESFVRPAVLITDAYNALNNQPSRRQRDQEFLDVILKTLRGDGNVLLPVDTAGRVLELMLILEQYWTQHHLNYPIFFLTYVASSTIDYVKSFLEWMSDSIAKSFEHTRDNAFLLKHVTLLISKSELEKVPDGPKIVLASMASLEAGFSHDIFVEWATDAKNLVLFSERGQFATLARMLQADPPPKAVKVTMSKRVPLVGEELAAYEEEQERIKKEEALKASLSKEDEMKASRGSDNKLGDPMVIDTTTPPASSDVAVPHVGGHRDILIDGFVPPSTSVAPMFPFYENSSEWDDFGEVINPEDYVIKDEDMDQATMQVGDDLNGKLDEGAASLIFDTTPSKVISNELTVQVKCMLVYMDFEGRSDGRSIKSILSHVAPLKLVLVHGSAEATEHLKQHCLKHVCPHVYAPQIGETIDVTSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKTESGSLSLLPLSTPPPSHDTVFVGDIKMADFKQFLASKGIQVEFSGGALRCGEYVTLRKVGDASQKGGGAIIQQIVMEGPLCDEYYKIREYLYSQYYLL* 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17546562 17566153 + Vvi16g706 Vvi16g706 778355

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g706 740 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2 1 739 IPR027075 GO:0005847|GO:0006378|GO:0006379
Vvi16g706 740 Pfam Cleavage and polyadenylation factor 2 C-terminal 650 737 IPR025069 -
Vvi16g706 740 Gene3D - 7 260 IPR036866 -
Vvi16g706 740 MobiDBLite consensus disorder prediction 404 421 - -
Vvi16g706 740 SUPERFAMILY Metallo-hydrolase/oxidoreductase 5 603 IPR036866 -
Vvi16g706 740 Pfam Metallo-beta-lactamase superfamily domain 22 198 IPR001279 -
Vvi16g706 740 Coils Coil 392 412 - -
Vvi16g706 740 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 534 585 IPR011108 -
Vvi16g706 740 CDD CPSF2-like_MBL-fold 8 203 IPR035639 -
Vvi16g706 740 Pfam Beta-Casp domain 242 365 IPR022712 -
Vvi16g706 740 MobiDBLite consensus disorder prediction 404 429 - -
Vvi16g706 740 SMART Beta_Casp_2 242 365 IPR022712 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g706 K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2 - vvi:100267865 1459.89
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g706 . . . . . . . . . . . . . . Sed07g1024 . . Bhi01g01305 Tan01g0239 Cmetu06g0283 . Hepe07g0147 . . . . . . . . . . . . . . . . Cme06g01010 . . . . . . . . . . . Cma16g00118 . Car16g00108 . . . . . . . . . . . . . . . . . . Csa03g01722 Chy06g00954 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011726 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 30