Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g707 ATGGCCTCAGTGACGACTAATTGGTCTCCGAGCTCGTTCCAGCTCCGTTTCTCCTTCCAATGCAGAAGATCTCCTGCGGTTTTTGTACGGACGCACGTTCGCAAGCTTGATCGTCAGGTTCGCGTGTTGTCCATTGCCGGCGATGGGAATGGAGTGGGGCGACATCGTGATGGGAATTCGTGGATCAGTTCGGAATCCAAGGGTGATGATTTGTCGGGATGGTCCGGTTCAGATGGTTCTGAACAATACGGTAAATCGCAGAAGAAACGATGGCCCGGAGGAATGGTTGGAGCAGGAGTAGCTGGAGTTGTTCTTGTTGCTGGTCTTTCCTTTGCGGCCTTTTCTTTGAGCAAGCAGAATCCTTCCAGACCAGAAAAACAGATGGAGGCCATGACAATACAGATGGAACAAGGAATCCTGCAAGAAGATTATAGTCTAGAGAGTAAGACAGGTACTGATGCCATGCCTACTCCTTCCATTCAAGAAGATATGTCAGATGCCAGCCTTGCTGTGGGTTCATCAGAATCTTCTCAACTTGAAGAGAATGGGGATGCTCTTAAACTGGTTAACTCGTCAATCCATGATGCTGATACCACAAATCTTAATTCTGATGACCAAGGAGAACTGCTTGGGTCAAAGGGTACAGAAAATTCCAACTTCTCACTAGAGTCATCTTCCAGTTCTTTTCCCAGGACTGTGGATGAAGATCATTATGTGCACTCTGACAAGATGCTAAATGAGTGGAAGAGCATACCAAATAAATCATTTGTGGATGCAAATGGGACTCAACACCCTGTTTCAGAGAAGGAATATCTTGACCTGGACGAGCTGCAGAAGGACATACCAAATGAATCATATGTGAAACTGCATGATCTAAATGCAAGTGGGATTCAAGACCCTGTTTCAGATGGGGAATATCTTGACCCGGACGAGCTGCAGAAGGACATAACAAATAAATCATATGTGAAACTGCGTGATCTAAATGCAAGTGGGATTCAAGATCCTGTTTCAGATAAGGAACATCTTGACCTGGAAGAGCTGCAGGACATACCAAATAAATCATATGAGAAACTGCATGATCTAAATGCAGATAAGGAATATCTTGACATGGAAGAGCTGGAGAAGGACATACCAAATAAATCATATGTGAAACTGTGTGATCTAAATGCAAGTGGGATTCAACACTCTGCTCCAGATGGGGAATATCTTGACCTGGACGAGCTGCAGAAGGACATACCAAATAAATCATATGTGAAACTGCATGATTTAAATGCAGATAGGGAATATCTTGACCTGGAAGAGCTGGAGAAGGACATACCAAATAAATCATATGTGAAACTGCATGATCTAAATGCTAGTGGGTCAACATCTTCTACATCAGCATTACCCTATCCATTTGATTATGACCAGGATGTAAATCTTCAAAATAAGATCCAAAGAAACAGATCATTTTTGGAATCACCAATAGCTGAGAATTCTTTCTCCTCTGCTGGTATACCTGCTCCATCTGCAGTTTCTGAAAGTCTGAAGGTGCTTCCTGGACAGGTTGTTGTTCCTGCAGTTGTTGATCAAGTCCAGGGACAGGCGCTAGCAGCATTGCAGGTTTTAAAGGTCATCGAACCTGATGTTCAACCTAGCGATCTATGTACACGTCGTGAGTTTGCTCGTTGGTTGGTTTCTGCAAGTAGTGTTCTTTCAAGGAATACAGTTTCAAAGGTATATCCAGCTATGTACATAGGAAATATTACTGAACTTGCATTTGATGATATTACACCTGAAGACCCTGATTTTTCATCCATTCAAGGCTTGGCAGAGGCTGGGCTTATCTCAAGCAAGCTATCAAGACGTGATTTGCTTTCTTTTTCAGATGAAGAAGACCAGAGTCCCTTCTATTTCTCTCCTGACAGCCCATTGTCACGGCAAGATCTTGTGAGCTGGAAGATGGCCCTAGAGAAAAGACAGCTCCCAGAAACTGACAAAAAGGTCCTGTACCAAGTTTCTGGTTTTATAGACATCGATAGCATAAACCCTGATGCATGGCCTGCCCTTGTGGCTGATGCATCTGCAGGAGAACAGGGAATAATAGCACTTGCATTTGGTTACACAAGACTGTTCCAACCCAATAAGCCAGTCACAAAGGCTCAAGCTGCTATTGCTCTTGCAACTGGTGAGTCATCAGATATAGTTAGTGAGGAACTTGCACGCATTGAAGCCGAAGCTATGGCAGAAAAGGCTGTTGCTGAGCATAGTGCATTAGTAGATCAAGTTGAGAAAGAACTAAATGCTAGTTTTGAGAAGGAGCTTTCCTTAGAAAGAAAAAAGATTGATGCTATGGAGAAATTGGCTGAAGAAGCACGGCAGGAATTGGAAAAGTTAAGAGCTGAGAGAGATGAAGATAATATTTCCTTAATAAAAGAACGTGCTGCCATTGAATCAGAAATGGAAGTTCTCTCAAGGTTAAGGAGTGAGGTGGAGGAGCAGTTGCAGAGCTTTATGAGTAATAAGGTGGAGATATCTTATGAAAAGGAAAGGATTAGCAAACTTCGGAAAGAAGCAGAAAGTGAAAACCAGGAGATTGCCCGATTACAATATGAGCTGGAGGTTGAGAGGAAAGCCTTGTCTATGGCCAGGGCTTGGGCTGAGGATGAGGCAAAAAGGGCAAGAGAACAAGCAAAAGCCCTGGAGGAGGCTAGAGATCGCTGGGAGAAGCATGGCATCAAAGTTGTTGTTGACAATGAGCTACGTGAAGAGGCCTCTGCTGAAGTTACATGGCTCGATACAGCAAAGCAGTTCTCAGTTGATGGAACTGTCAGCAGGGCTGAGAATTTGGTGGACAAACTCAATGCAATGGGATCTGACCTAAGAGGCAAATCTAAAGATGTTATTGATAACATTGTCCAGAAGATAATCCATTTAATATCAATTTTGAGGGAGTTGGCCTCAAAGGTAGGCACACAAGTCAGAGAGCTAAAAGATGCTGCTGTTGTGAAAGCTGGTGGATCGATACAAGAGTTGCAGCAGAACACAGCAGAATTCAGTTTGGCCATCAAAGAAGGGACAAAACGAGTGGTGGGAGACTGCAGGGGAGGAGTAGAGAAACTTACCCAGAAGTTCAAGACATAA 3123 43.64 MASVTTNWSPSSFQLRFSFQCRRSPAVFVRTHVRKLDRQVRVLSIAGDGNGVGRHRDGNSWISSESKGDDLSGWSGSDGSEQYGKSQKKRWPGGMVGAGVAGVVLVAGLSFAAFSLSKQNPSRPEKQMEAMTIQMEQGILQEDYSLESKTGTDAMPTPSIQEDMSDASLAVGSSESSQLEENGDALKLVNSSIHDADTTNLNSDDQGELLGSKGTENSNFSLESSSSSFPRTVDEDHYVHSDKMLNEWKSIPNKSFVDANGTQHPVSEKEYLDLDELQKDIPNESYVKLHDLNASGIQDPVSDGEYLDPDELQKDITNKSYVKLRDLNASGIQDPVSDKEHLDLEELQDIPNKSYEKLHDLNADKEYLDMEELEKDIPNKSYVKLCDLNASGIQHSAPDGEYLDLDELQKDIPNKSYVKLHDLNADREYLDLEELEKDIPNKSYVKLHDLNASGSTSSTSALPYPFDYDQDVNLQNKIQRNRSFLESPIAENSFSSAGIPAPSAVSESLKVLPGQVVVPAVVDQVQGQALAALQVLKVIEPDVQPSDLCTRREFARWLVSASSVLSRNTVSKVYPAMYIGNITELAFDDITPEDPDFSSIQGLAEAGLISSKLSRRDLLSFSDEEDQSPFYFSPDSPLSRQDLVSWKMALEKRQLPETDKKVLYQVSGFIDIDSINPDAWPALVADASAGEQGIIALAFGYTRLFQPNKPVTKAQAAIALATGESSDIVSEELARIEAEAMAEKAVAEHSALVDQVEKELNASFEKELSLERKKIDAMEKLAEEARQELEKLRAERDEDNISLIKERAAIESEMEVLSRLRSEVEEQLQSFMSNKVEISYEKERISKLRKEAESENQEIARLQYELEVERKALSMARAWAEDEAKRAREQAKALEEARDRWEKHGIKVVVDNELREEASAEVTWLDTAKQFSVDGTVSRAENLVDKLNAMGSDLRGKSKDVIDNIVQKIIHLISILRELASKVGTQVRELKDAAVVKAGGSIQELQQNTAEFSLAIKEGTKRVVGDCRGGVEKLTQKFKT* 1041
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17566980 17576243 + Vvi16g707 Vvi16g707 778356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g707 1040 Coils Coil 838 872 - -
Vvi16g707 1040 Coils Coil 807 827 - -
Vvi16g707 1040 Coils Coil 761 802 - -
Vvi16g707 1040 Coils Coil 877 904 - -
Vvi16g707 1040 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 1040 - -
Vvi16g707 1040 MobiDBLite consensus disorder prediction 196 231 - -
Vvi16g707 1040 MobiDBLite consensus disorder prediction 64 82 - -
Vvi16g707 1040 PANTHER GPI-ANCHORED ADHESIN-LIKE PROTEIN 1 1040 - -
Vvi16g707 1040 MobiDBLite consensus disorder prediction 54 89 - -
Vvi16g707 1040 ProSiteProfiles S-layer homology (SLH) domain profile. 666 734 IPR001119 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g707 - - - vvi:100264485 1930.22
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g707 . . . . . . . Bma14g02074 . Cmo18g01276 . . . . . . Cpe14g00103 Bhi01g01302 Tan01g0237 . . . Mch10g0147 . . . . . . . . Cone1ag1163 Cone5ag0873 . . . . . Cme06g01012 . . . . . . . . . . . . . Car16g00107 Car18g01161 Cpe09g00084 . . . . . . . . Cla05g00890 . Cec05g0981 . . Cmu05g0921 . . Csa03g01723 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011727 2 3 1 1 1 0 3 0 1 0 0 0 1 1 1 1 1 2 1 0 1 1 1 1 1 0 0 1 3 1 30