Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g714 ATGGCTTCAATTTCATCAAATTATGTCAAAGCCGATTCGAGTTCGTGGAACCCAAGTCGGAAAATTCGGATAGTCGGGAAAATCAGGGGTTTTACAGATCTTGAATCTCAATCCTCTACTGGGTTCTCAGGGCCGTGGATTTCGGTTGGCAAGCCTAATGGAGAATTCTCTGAGAGTGTGACTCTGTCCTTCGGAGACCACCCCACCAGTCGCAAGGAATCTTATGAGATAGATTATTGCTATGCACAAGATGAAGACAATGGCCTAATCTTCTCAAGAGAGATCAAACCTATGATTTCAAGGGTTTGCAATGGTCACACTGCATCTGTTATTGCATATGGAGCTAGAGGTAGTGGAAAGACATACACAATTCAGGGTTCTGATGAGAAACCGGGTTTAGCAGCACTAGCCATGACTGAACTTCTACAGATGGCTGGGGAAATTGGGAAATCAGTTTCTATATCTTCCTTTGAGGTTTACCAAGACCATGTTTATGATCTCTTGGATCCAAAACGGCCACCGGCTCCTGTGAACTCCATTTCAGAATTCTACAGATTATATTTTAATGGGTTTGGTTCACGTAAACCAGCTCAGAAGATACCAACCGAACTCCCTCGTAGGAGCCACAAGGGCTTAATGGTATATGTGTCATCTCAGAACTCGGAAACTAACCTCGTGGGCAAAATGAATTTTGTCGATTTGGCAGGTTATGAGGACACCAGAAAGAAGAGTGTTGATGGTCCCAACCTTATGGAGAATACAAAAATTAACAAGTCCTTATATGCCTTGCAGAATGTTGTTTATGCTTTGAGTGTCAATGAAAGCCATGTTCCATACCGAGAAAGCAAACTAACTCGCATGTTGCAGGATTCCTTTGGAGGGATGAACCAAATTTTGATGGTTACTTGCTTGAATCCATCTTTTTGCCAAGACACCATTTACTCTGTAAGTTTAGCTTCTCGGTCATATCAACGGGCTTTTACAAATTCCACAAAGAAAATCAAAAGTTCAGCAAAACCAACAGGCCTTTCTGCATTGAAGAATGGAAAACCCACTGGTGTTTCTTCTACTGTGAAGAAACAAACCAGCTCCCAAGTGCATTTCTCTGATAAGAAAGCCAATTTTACAGATTCTATAGTGAAAGGAAGGTATGTACTCGAGAATTCAATGCAGGCAGATTCCTCATCAAGCATTGCTTCAGTTATTGAACCTTCTTTACAGGAAGAGGTGAAGTCCATTTCAGATGTCTCTTTAGCCACAGTACCTTCAGAAGAGGAAAATTCATTATCAGTTGCTGTTACAGATACAGAACCTGTTTTTGTAGAAGAAAAGGTTTCTGCATACCATGATAATGACAATCATCCTGAAGTTACTTCTGGGAATAGCAGCACGACATTGGCTTTGATTGAAGAAGGTCACCATATAATAGAAGAAAAAGAGAACAAAAGCTTATTTGCAAATGGAAATGGATCGCCACCACTAAGTGCCAGATTACGAGAACTATCGAATAACCTGAAATCTCTGTACTCTTCAACTCCAGTATGCATAAAGCTCCCTGAGAATGATACTTCCTCCACTAACCAAGCTTCTGCTTTGGTGGAACCAAAAACTCCGGCCGTCGAAAAAAAATTGAGAGGGAATGATAAATGGGAGGTTGCAAACATTAGTAGTCCTTGGGAAGCACTCCACATGCACAGTTCTAGAATGAAGAAGTCACTTGTTGAAGAAACCCTCAAGTTTTTGAACAGTGCTAACAAGGAGGAGTTGAAAGGACTAAAGGGTATTGGAGAGAAAAGATCTACATACATTCTCGAACTTCGTCAAGAATCCCCTGAACCTTTCAAGAGTCTGGATGACTTAAAAGACATTGGTCTTTCAGAAAAGCAGATAAAAGGAATGATGAAGAAGGTAGTTGAAGAGGTTTTGAACTAG 1932 40.99 MASISSNYVKADSSSWNPSRKIRIVGKIRGFTDLESQSSTGFSGPWISVGKPNGEFSESVTLSFGDHPTSRKESYEIDYCYAQDEDNGLIFSREIKPMISRVCNGHTASVIAYGARGSGKTYTIQGSDEKPGLAALAMTELLQMAGEIGKSVSISSFEVYQDHVYDLLDPKRPPAPVNSISEFYRLYFNGFGSRKPAQKIPTELPRRSHKGLMVYVSSQNSETNLVGKMNFVDLAGYEDTRKKSVDGPNLMENTKINKSLYALQNVVYALSVNESHVPYRESKLTRMLQDSFGGMNQILMVTCLNPSFCQDTIYSVSLASRSYQRAFTNSTKKIKSSAKPTGLSALKNGKPTGVSSTVKKQTSSQVHFSDKKANFTDSIVKGRYVLENSMQADSSSSIASVIEPSLQEEVKSISDVSLATVPSEEENSLSVAVTDTEPVFVEEKVSAYHDNDNHPEVTSGNSSTTLALIEEGHHIIEEKENKSLFANGNGSPPLSARLRELSNNLKSLYSSTPVCIKLPENDTSSTNQASALVEPKTPAVEKKLRGNDKWEVANISSPWEALHMHSSRMKKSLVEETLKFLNSANKEELKGLKGIGEKRSTYILELRQESPEPFKSLDDLKDIGLSEKQIKGMMKKVVEEVLN* 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17625000 17630168 + Vvi16g714 Vvi16g714 778363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g714 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 322 IPR027417 -
Vvi16g714 643 PANTHER KINESIN-RELATED 21 638 IPR027640 GO:0003777|GO:0007018
Vvi16g714 643 MobiDBLite consensus disorder prediction 339 361 - -
Vvi16g714 643 PANTHER KINESIN-LIKE PROTEIN KIN-10C 21 638 - -
Vvi16g714 643 Pfam Kinesin motor domain 66 171 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 Pfam Kinesin motor domain 176 322 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 Gene3D Kinesin motor domain 2 324 IPR036961 -
Vvi16g714 643 SUPERFAMILY RuvA domain 2-like 572 638 IPR010994 -
Vvi16g714 643 Gene3D - 566 641 - -
Vvi16g714 643 PRINTS Kinesin heavy chain signature 105 126 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 PRINTS Kinesin heavy chain signature 228 246 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 PRINTS Kinesin heavy chain signature 277 298 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 SMART kinesin_4 19 330 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g714 643 ProSiteProfiles Kinesin motor domain profile. 21 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g714 K10403 KIF22; kinesin family member 22 - vvi:100250822 1228.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g320 Vvi16g714 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g714 . Blo15g00172 . . . Bpe07g00933 . . . . . Cma15g01088 . Car15g01000 . . . . . . . . . . Cla01g00444 Cam01g0467 Cec01g0456 Cco01g0478 Clacu01g0466 Cmu01g0444 Cre09g2068 Cone1ag1166 Cone5ag0876 . . . Csa05g00279 Chy09g01230 . . . Bda06g00688 . . . . Bma12g01117 . . Cmo15g01148 . . . . . Cpe13g00262 Bhi12g00497 . . . . . Lcy12g0037 . . . . . . . . . . Cme09g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009133 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 34