Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g715 ATGGACACCACAGAAGCACCTCCCCAAGATCAAGCCAGTGGTCAGGATGATTCCTCAATCAACCAAAAACTCATCGATGATCTTCGCACCGGAAATGATGCTCTTGTTGCTGAGCTTGAAGCTCTTAATTCTTCCTACCAGACCCTTTTATCGAAATCCACTGAAATGGAGGAAAATTTAGCTGAAATCCGGACTCAGAGGGATGAAATTCTGAAGCGAAACGTGGATCTAGTGAAGGAAATTGAAGAAGTTTCGCGGGAAAGAGACAGTCTCCGCGATAAGCTTAGTGGGGTTGAGGCTTCTCTTAGGGATTGTGAAGATGCATTAGGGAAGAAAATCGATGAGGGCATGATAGAGCAAGAAAAACTTCAAACCCGGGTTGAAGAACTGTTGGGTGAGAAAAAGGAGAGGGAAAAGATTCTGTTGGAGAACTTGGGCTCATTGGAGACCATCAAGGAATGCTTAATAAGGGTAATTGATAGTCTCGATGAAGAAAAAGCAGGGATTGTCATTGAGAAAAGCGAAGAAGTGGTTTCAGATGAAGAACTGAGGCCTTCTATAGAGGCAATAAAGGCGGTATCGATGCTGGCAAGTATGGTGGAGTCGAAAGTGAGTGAGTACCAAGAAATGAGGAAGAAGGAGAAGAGGGAATTGGAGAACAGTGTGGTGAGTTTGACAGAGGAGAATCGAGATATCAACAGTTTACTGAGGATTGCACTGGTGGAAAAAGACGTGGTGGAGAAGAGTCTTAATAGGTTGAAGGGGAATAATGAGCAGAAGAGAGTTGCCCTTTTGCAGATTGCCGAGCGAGGACTGCAGAAGGTGGGGTTTGGGTTCATGATGGGCAGTGCTCCAAATGAAGTACCCGTCGAAAATTTGGGGTCAAATGCAGGCAGTAAGTCAGATAGTAGTGAATGTGAAGAGGAGGTTGTTAGTCTGGCCTCAACTGTGGAGAGGATAATGAAGAATCTACGACAAGAAATCACACAATTGAGGAGATCTTTGGAGGAATCTAGGTCAGACACCGAGCGCCTTCAGAGTCTTACAGAGAAACAAGCTCAGAAAATTGCAGAAAACACATTGTACATAAAGGAGTTGGAAGACAGAGAGATGGTGTTTGCTCAAAATGTTGAAGAACTCCTCTTGGAAATGAAAGAAACCGAAGAAGAGGTTGCTAGATGGAGGGAAGCTTGTGAATTAGAAGTGGAAGCAGGAAAAAATGTTGTTGAAGAACGTGATAAAGTGACTCTAATTCTGAAACAAGAGTTGGAGAAGACAAAGACGGCTTTGGACATATCAAATGGAAAGTTGAAGCTGAAAGAAGACCTTGCAGCTGCTGCCATGGCTGCCCAGGCAGCAGCAGAGAGGTCTCTTCAGCTAGCTGACAGCAGGGCTGCAGAGCTACGTGAGAGGATCGAGGAGCTCACAAGACAATTAGAAGAAGCAGAGAGCAGGGATCGGAACCGCCTTAGGGTTAGGCATGTGTGTTGGCCATGGCGAGCCCTCAAGGTGAACCCTGCTAGTAACACAAACACTAGAGTTGGGAGTGTAAGAAGGATGCTCCCAGAAATGCAAGCCTTGCTTCATTAG 1590 45.41 MDTTEAPPQDQASGQDDSSINQKLIDDLRTGNDALVAELEALNSSYQTLLSKSTEMEENLAEIRTQRDEILKRNVDLVKEIEEVSRERDSLRDKLSGVEASLRDCEDALGKKIDEGMIEQEKLQTRVEELLGEKKEREKILLENLGSLETIKECLIRVIDSLDEEKAGIVIEKSEEVVSDEELRPSIEAIKAVSMLASMVESKVSEYQEMRKKEKRELENSVVSLTEENRDINSLLRIALVEKDVVEKSLNRLKGNNEQKRVALLQIAERGLQKVGFGFMMGSAPNEVPVENLGSNAGSKSDSSECEEEVVSLASTVERIMKNLRQEITQLRRSLEESRSDTERLQSLTEKQAQKIAENTLYIKELEDREMVFAQNVEELLLEMKETEEEVARWREACELEVEAGKNVVEERDKVTLILKQELEKTKTALDISNGKLKLKEDLAAAAMAAQAAAERSLQLADSRAAELRERIEELTRQLEEAESRDRNRLRVRHVCWPWRALKVNPASNTNTRVGSVRRMLPEMQALLH* 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17630577 17633330 - Vvi16g715 Vvi16g715 778364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g715 529 Coils Coil 197 235 - -
Vvi16g715 529 Coils Coil 39 101 - -
Vvi16g715 529 Coils Coil 314 341 - -
Vvi16g715 529 PANTHER OS08G0559800 PROTEIN 16 529 IPR040300 -
Vvi16g715 529 MobiDBLite consensus disorder prediction 1 20 - -
Vvi16g715 529 PANTHER OS08G0559800 PROTEIN 16 529 - -
Vvi16g715 529 Coils Coil 363 404 - -
Vvi16g715 529 Coils Coil 451 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g715 - - - vvi:100245682 936.791
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g715 Blo06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0078 Cone15ag0079 . . . . . . . Bda15g00716 . Bpe12g00436 Bma08g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016619 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7