Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g716 ATGGAGAGTTGTGCAGAGATCGAGAATGGGCCAGTCGGTGATGTGGAAAACACGATTTTTGTGGCGGTTGGTAAGAGGGTGGAGAAGAGCAAAACGGCTCTGTTTTGGGCTGTGAAGAACTTTTCAGGGAAGAGAGTATGTGTACTTCATGTTCATCAACCTGAGAATACATACGCGTCCGTGAACAAAAAGGTTTCAGCTAACAAATTGAAACAACAAGCAGTCAAGGCTTCCTACGAACGTGAAAGGCAAAATATGATGAAACTTCTCAATCAATACCTCCTTATTCTTGCCCAAAAGGGGGTGCGGGCTTATAAACTGTGGATTGAAATGGAAAATATTGAGAAAGGGATTGTAGAAATCATTGCTCAGAAGAATATAAAATGGCTTGTTATGGGAGCTGCAGCAGATAAATATTATTCAAAGAAAATGGCTGAGCTCAAGTCCAAGAAAGCGATCTTTGTATGCCAACAAGCACCACTTTCCTGTCATATTTGGTTTGCTTGCAAGGGTTACCTCATTTACACAAGGGGAAGTAGACAGGTTGAAACTGAAATAGAGGTTTCTCCTCCTTTGCTGCTACTGAATAAAAATGTGGAGAGCAAGCAATCTGCGAACCTGATATCAGAATCTATTACATATAAGCAGAAATCCTTTGATTTGTCCTCCCTGAAGAGTACCGGAAGAATGATGTTACTACAGTACCATGCAAATACAGAAGAAAATGCTGATGAATGGGATGGAATGTCAAGAAGGTCCAGTTCTCCACGCCTATCGAGTTCAAATTGGTCAAACAAAGGAGAGGTTGACAGTTTACACTCTACCCTCTGTCCGAAGGATGAAGCACAAGAGGAAGATTCAATTTTACCCTCAGTACAAAAAGCCCATGATGGTCATCATTATTCACCATCTATTATTTTTCTGGACGAAAAAAATCAAGGACTGGCAACTGACGGAAGTTATGATAGACTAGAACCAGCCATTATGTTTACTAAAAACTCAAAGCAGGATGCATTTGAAGAGTCAGTTAAGCGATGGCAAGCAGAAGATGATGCCATGGAGGCCATACGCAAGGCCAAAGAAACTGAAACATTACACACCAAGCATATGAGCAAAAGGAAAGAACTGGAGGAAGAGCTAGCAAGAGGAAAGGAAGAAGTAGAAAGGATGAAGAATCAACAGGATGAACTCATGAAAGAACTCCAGATGGTCCAGGACCAGAGATCAATACTGGAGAGCCGAATTGCAGAATCACATTCATCAGAGAAGGAGTTGGAGGAGAAGATCATCTCAGCTGTGAAACTCTTGATAAGTATAAGGCAGAAACGGGATGAACTGCTAGTAGAGCACAAAGATGCAATTAGAGAAGTCAATGAACTAAGAGGATCAGTACAAGAGGAGGCTGCAAGCTTTTGCACACCACAGTTCTTGTCTTTCTCTTTCATGGAGATCAATGAAGCAACCAACAATTTTGATCCATCATGGAAGATTGGAGAAGGAAGTTATGGAAGTGTCTATAAAGGGGTTCTTCGCCACATGCATGTAGCTATAAAAATGCTGCCTTTTTATGGCTCTCAAGACCACTTGGAGTTCCAGCATGAGGTGGAGGTTTCGTGTAGGGTGAGGCATCCAAATCTCATGACCCTCATTGGAACATGTCCAGAATCTAGGTCACTTATTTATGAGTACCTCCAAAATGGAAGCCTTGAAGACCGGCTCACCTGCAGGAACAGAACTCCCCCTCTTCCATGGCAAACTCGAATACGCATTGCCACAGAGATATGTTCTGCCCTTATCTTCCTTCACTCCAACAAGCCTTCAATCATCCATGGAAATCTGAAGCCTACCAAGGTGCTCCTTGATGGAAATTATGTTTGCAAGCTCGGTGACTTGGACATCTTGCGCATAATCCCTCCAGGTGAAAATATGACTAAAACCAGCCCAAAGAGTACCTCTGCTTATATGGACCCAGAATTTCTTGAGACTGGAGAACTTGCTCCAGAGTTGGATGTATACTCATTTGGAATTATAATGATGCGGCTTTTAACTGGGAGACCAGCGTTGGGAATAGTGAACGATGTCAAATGTGCACTAGAGAATGAAGTTTTTAATGCAGTTTTAGACTTTTCAGCTGGGGACTGGCCACTTGAGCAAGCAAATCAGCTGGCTCACTTGGCATTGAGATGCTGCGAGAAAAATCACTTCAATCGGCCTGATCTTGCATCCGAAGTATGGAGTGTTCTTGAGGCAATGATGGTTTCATGTACCGCCTCAGCAACATGCTTGGGATCCCGACCCCATCGCCGAATTCCTTCTCATTTCATTTGTCCCATTTTCCAGGAAGTCATGAAAGATCCACATATAGCAGCAGATGGGTTCACATATGAGGCAGATGCAATCAAAGGATGGCTGCAAAGTGGCCACAACACTTCACCAATGACCAATCTTAAGCTATCAGACTGCAATTTACTGCCCAATTATGCCCTACTTTATGCTATTCAGGAGTGGCAGCAACGATCATGA 2523 42.96 MESCAEIENGPVGDVENTIFVAVGKRVEKSKTALFWAVKNFSGKRVCVLHVHQPENTYASVNKKVSANKLKQQAVKASYERERQNMMKLLNQYLLILAQKGVRAYKLWIEMENIEKGIVEIIAQKNIKWLVMGAAADKYYSKKMAELKSKKAIFVCQQAPLSCHIWFACKGYLIYTRGSRQVETEIEVSPPLLLLNKNVESKQSANLISESITYKQKSFDLSSLKSTGRMMLLQYHANTEENADEWDGMSRRSSSPRLSSSNWSNKGEVDSLHSTLCPKDEAQEEDSILPSVQKAHDGHHYSPSIIFLDEKNQGLATDGSYDRLEPAIMFTKNSKQDAFEESVKRWQAEDDAMEAIRKAKETETLHTKHMSKRKELEEELARGKEEVERMKNQQDELMKELQMVQDQRSILESRIAESHSSEKELEEKIISAVKLLISIRQKRDELLVEHKDAIREVNELRGSVQEEAASFCTPQFLSFSFMEINEATNNFDPSWKIGEGSYGSVYKGVLRHMHVAIKMLPFYGSQDHLEFQHEVEVSCRVRHPNLMTLIGTCPESRSLIYEYLQNGSLEDRLTCRNRTPPLPWQTRIRIATEICSALIFLHSNKPSIIHGNLKPTKVLLDGNYVCKLGDLDILRIIPPGENMTKTSPKSTSAYMDPEFLETGELAPELDVYSFGIIMMRLLTGRPALGIVNDVKCALENEVFNAVLDFSAGDWPLEQANQLAHLALRCCEKNHFNRPDLASEVWSVLEAMMVSCTASATCLGSRPHRRIPSHFICPIFQEVMKDPHIAADGFTYEADAIKGWLQSGHNTSPMTNLKLSDCNLLPNYALLYAIQEWQQRS* 841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17636564 17646586 + Vvi16g716 Vvi16g716 778365

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g716 840 Pfam Protein kinase domain 496 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g716 840 Pfam U-box domain 770 838 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 ProSiteProfiles Protein kinase domain profile. 491 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g716 840 PANTHER OS02G0152300 PROTEIN 13 839 - -
Vvi16g716 840 SUPERFAMILY RING/U-box 766 839 - -
Vvi16g716 840 SMART Ubox_2 773 836 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 CDD RING-Ubox_WDSUB1_like 774 815 - -
Vvi16g716 840 Coils Coil 359 414 - -
Vvi16g716 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 840 IPR013083 -
Vvi16g716 840 ProSiteProfiles U-box domain profile. 769 840 IPR003613 GO:0004842|GO:0016567
Vvi16g716 840 SUPERFAMILY Protein kinase-like (PK-like) 471 752 IPR011009 -
Vvi16g716 840 Gene3D HUPs 12 135 IPR014729 -
Vvi16g716 840 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 32 13 839 - -
Vvi16g716 840 Gene3D Transferase(Phosphotransferase) domain 1 564 762 - -
Vvi16g716 840 MobiDBLite consensus disorder prediction 243 272 - -
Vvi16g716 840 Gene3D Phosphorylase Kinase; domain 1 462 563 - -
Vvi16g716 840 Pfam Universal stress protein family 18 134 IPR006016 -
Vvi16g716 840 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 134 - -
Vvi16g716 840 MobiDBLite consensus disorder prediction 252 271 - -
Vvi16g716 840 CDD STK_N 18 171 - -
Vvi16g716 840 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g716 - - - vvi:100267999 1660.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g857 Vvi16g716 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001162 3 11 1 3 3 1 4 0 0 2 1 1 3 2 1 2 1 4 4 1 2 2 2 2 2 1 2 5 3 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76277 PF07714 PK_Tyr_Ser-Thr 3.70E-35 CL0016 Vvi PK