Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g724 ATGTGGTTGTTCAGCAGAAAGGGAGCATCTGGGTTCTCAGGTTCTTCAACAGCTGAGGAAGTTACTCAAGGAATTGATGGCACTGGTCTTACTGCCATTGTTACAGGAGCATCAAGTGGCATTGGCACTGAAACAACTCGTGTTCTTGCATTGCGTGGTGTCCATGTCGTTATGGGGGTCAGGAATATGGCGGCTGGTCAAGAGGTAAAAGAGGCAATAGTTAAGGAAATCCCGACCGCTAAAGTTGATGTGATGGAGTTGGATCTAAGTTCAATGGCATCCGTAAGGAAATTTGCATCAGAGTTCAATTCTTCCGGCCTTCCATTGAACATTCTAATAAACAATGCAGGAACTACAGGCCCATACATGCTTTCCAAAGATAACATAGAGATGCTGTTTGCGACAAACCACTTAGGTCATTTTCTTTTGACAAGCTTGTTGTTGGACACGATGAAGAAAACAACGCAGGAAAGTGGCAAAGAGGGAAGGATTGTAATCGTCTCCTCAGAGGGTCACCGATTCACATATCGTGGAGGAATTCGCTTTGACAATATCAATGATAAATCAGGGTATAGCAGTCCATTCGCTTATGGCCAATCAAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCACGACGTTTTAAGGAAGATGGGGTGGACATAACTGCTAATTCTCTTCACCCAGGAGCAATTGTCACCAATATTTTCCGTCATAGCAGCATTCTTTCCGGACTGGTTAATACGGTTGGCAAATACGTGCTTAAAAATGTTCAGCAGGGAGCTGCAACCACATGCTATGTGGCATTGCATCCACAGGTGAAGGGGGTGAGCGGCCAATATTTTTCTGACTGTAACATAGCCAAGCCCGGCGCACAGGCCAAAGACCCCGAATTGGCCAAGAAACTCTGGGAATTCAGCACGGGTTTGATTTCAGAATGA 942 45.12 MWLFSRKGASGFSGSSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMAAGQEVKEAIVKEIPTAKVDVMELDLSSMASVRKFASEFNSSGLPLNILINNAGTTGPYMLSKDNIEMLFATNHLGHFLLTSLLLDTMKKTTQESGKEGRIVIVSSEGHRFTYRGGIRFDNINDKSGYSSPFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNIFRHSSILSGLVNTVGKYVLKNVQQGAATTCYVALHPQVKGVSGQYFSDCNIAKPGAQAKDPELAKKLWEFSTGLISE* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17682373 17688734 + Vvi16g724 Vvi16g724 778373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g724 313 PANTHER RETINOL DEHYDROGENASE 2 311 - -
Vvi16g724 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 289 IPR036291 -
Vvi16g724 313 Gene3D - 22 313 - -
Vvi16g724 313 Pfam short chain dehydrogenase 31 172 IPR002347 -
Vvi16g724 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vvi16g724 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vvi16g724 313 PRINTS Glucose/ribitol dehydrogenase family signature 156 172 IPR002347 -
Vvi16g724 313 PRINTS Glucose/ribitol dehydrogenase family signature 220 237 IPR002347 -
Vvi16g724 313 CDD retinol-DH_like_SDR_c_like 29 304 - -
Vvi16g724 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 311 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g724 - - - vvi:100242214 597.045
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g310 Vvi16g724 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g724 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00120 . . . . Bda06g00690 . . . . . . . Cmo15g01146 . . . . . . Bhi12g00031 . . Lac11g0044 . . Lcy12g0041 . . . . . . . Lsi09g00094 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126