Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g725 ATGTGGTGGTTCAGCAGAAAGGGACCATCTGGGTTCTCAGCTTCTTCAACAGCAGAGGAAGTTACTCAAGGAATTGATGGCACTGGTCTTACTGCCATTGTTACAGGAGCATCAAGTGGCATTGGCACTGAAACAACTCGTGTTCTTGCATTGCGTGGTGTCCATGTTGTTATGGGGGTCAGGAATATGTCAGCTGGTAAAGAGGTAAAAGAGGCAATAGTTAAGGAAATCCCGACTGCTAAAGTTGATGCGATGGAGTTGGATCTAAGTTCAATGGCATCTGTAAGGAAATTTGCATCAGAGTATAATTCTTCCGGTCTTCCATTGAACATTCTAATAAACAATGCAGGAATTATGGCCGTCCCATACATGCTCTCCAAAGATAACATAGAAATGCAGTTTGCGACAAACCACTTAGGTCATTTTCTTTTGACAAACCTGTTGTTGGACACAATGAAGAAAACAACACGGAAAAGTAGAAAAGAGGGAAGGATAGTGAATGTCTCCTCAATGGCTCATCGGTACCCATATCGTGAAGGGATTCGCTTTGATAAGATCAATGATAAATCAGGGTATAGCAGTCTATTCGCTTATGGCCAATCAAAGCTTGCTAATGTTTTGCATGCTAATGAGCTTGCACGACGTTTTAAGGAAGATGGGGTGGACATAACTGCTAATTCGCTTCACCCAGGAGCAATTGTCACCAATCTTTTCCGTTGTAGCAGCATTGTTTCTGGACTGGTTAATACGGTTGGCAAACTTGTGCTTAAAAATGTTCAGCAGGGAGCTGCAACAACATGCTATGTGGCATTGCATCCACAGGTGAAGGGGGTGAGCGGCCAATATTTTTCTGACTGTAACATAGCCAAACCCAGCTCACAGGCCAAAGACCCTGAATTGGCGAAGAAGCTCTGGGAATTCAGCATGAATTTGGTTAAATGA 942 43.31 MWWFSRKGPSGFSASSTAEEVTQGIDGTGLTAIVTGASSGIGTETTRVLALRGVHVVMGVRNMSAGKEVKEAIVKEIPTAKVDAMELDLSSMASVRKFASEYNSSGLPLNILINNAGIMAVPYMLSKDNIEMQFATNHLGHFLLTNLLLDTMKKTTRKSRKEGRIVNVSSMAHRYPYREGIRFDKINDKSGYSSLFAYGQSKLANVLHANELARRFKEDGVDITANSLHPGAIVTNLFRCSSIVSGLVNTVGKLVLKNVQQGAATTCYVALHPQVKGVSGQYFSDCNIAKPSSQAKDPELAKKLWEFSMNLVK* 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17690131 17699354 + Vvi16g725 Vvi16g725 778374

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g725 313 PANTHER RETINOL DEHYDROGENASE 2 313 - -
Vvi16g725 313 Pfam short chain dehydrogenase 31 179 IPR002347 -
Vvi16g725 313 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 313 - -
Vvi16g725 313 Gene3D - 22 313 - -
Vvi16g725 313 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Vvi16g725 313 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Vvi16g725 313 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vvi16g725 313 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Vvi16g725 313 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 290 IPR036291 -
Vvi16g725 313 CDD retinol-DH_like_SDR_c_like 29 305 - -
Vvi16g725 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Vvi16g725 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vvi16g725 313 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g725 - - - vvi:100264493 597.816
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g310 Vvi16g725 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1173 Cone5ag0880 Cone14ag0073 Cone15ag0076 . . Chy09g01373 . . . . . . . . Bma12g01115 . . . . . . . . . Bhi12g00030 . . Lac11g0045 . . Lcy12g0042 . . . . . . . Lsi09g00093 . . Cme09g01920
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000397 4 5 3 4 3 4 5 4 3 4 3 3 5 4 4 6 3 6 5 4 4 4 4 4 5 4 4 5 5 5 126