Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi16g727 | ATGCCTTCATGGTGGGGAAAATCATCATCCAAAGAAGCAAAGAAGAAAACAAACAAGGAAAGTTTCATCGACACATTACATCGAAAATTTAAGATTCCATCTGAAGGTAAGGTGAGCAATAGATCAGGAGGGTCTCATAGACGGTGCAGTGATACAATATCAGAGAAGGGATCTCAATCCCGAGCAGAATCAAGATCACCATCACCTTCCAAACTAGTGTCAAGATGTCAAAGTTTTGTTGAAAGGCCTAATGCCCAACCACTTCCACTTCCTGGTCGGCACCCTGCAAGTGTGGGTCGTACTGATTCTGGAATCAGTATATCAACAAAACAAAGACTGGAAAAAGGCTCCAAGTCATCCTTTCTTCCTCTCCCAAGACCCAGATGCATTGGGGGCAGACCCGATCCTACAGATTTAGATGGTGATTTTGTTGCTTCAGTTTATAGCGAAGGTTCCACTGATAGTGAAGATGCAGCTGACTCACATCATCGTAGTCCCCAGGCAACTGACTATGATAATGGGACTAGAACTGCTGCAAGCATATTTTCTAGTGTAATGCTCAAGGATCAGTCACCTGTTGCTCATGTAAACGCAAGGGAGGCACAAAAACCAGCTAATCTTTTGTTTAGTAATCATATTTCCCCTACATCACCTAAACGGAGGCCTTTAAGCAGCCATGTACCAAATTTACAGGTCCCTTATCATGGTGCTTTCGGCAGTGCTCCAGACAGCTCAATGTCAAGTCCTTCAAGAAGTCCATTGAGAGCATTTGGCACTGACCAAGGTTTGAACTCTGCTTTCTGGGCTGGGAAACCTTATTCAGATGTTACTTTACTTGGATCTGGCCAATGCTCCAGTCCAGGTTCAGGTCAGAATTCTGGGCACAATTCAATGGGAGGAGATATGTCAGGACAGTTGTTTTGGCAACCCAGCAGGGGCAGCCCGGAGTATTCTCCTATACCTAGTCCCAGAATGACAAGCCCTGGTCCCAGCTCCAGAATTCATAGTGGTGCAGTCACACCTCTTCATCCCAGAGCTGGAGGAGCAGCCTCTGAATCCCAGACAAGCTGGCCAGATGAGGGGAAACAACAAAGCCACCGGTTGCCCCTTCCTCCTGTAGCAGTTTCTTCTTCTTCACCTTTCTCTCATTCAAATTCACCAGCAGCATCTCCCTCTGTCCCACGCAGTCCAGGAAGAGCAGAGGCTCCAACAAGCCCAGGCTCTCGCTGGAAAAAGGGAAAGTTGCTGGGAAGAGGCACATTTGGACATGTTTATGTTGGCTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACACTATTTTCAGATGATGCAAAGTCAAAGGAAAGTGCAAAACAGTTGGGGCAAGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGGTTGGTGACAAACTTTATATATACTTGGAGTATGTATCTGGTGGCTCCATCTATAAACTTCTTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGGGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCATATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGTTTGAAGGGGTTGCTGCAATGTTCAAGATTGGGAATAGTAAGGACCTCCCAGCAATTCCTGATCACCTTTCAGATGAAGGTAAGGATTTTGTAAGGCAGTGCTTGCAACGAAATCCACTACATCGTCCAACAGCTGCTCAGCTCTTGGAGCATCCTTTCGTGAAAAATGCTGCACCTCTGGAAAGACCTATTTTGTCCCCTGAAACTTCAGATCCACCTCCTGGAGTTACCAATGGAGTGAAATCTCTGGGAATCGGACATGCTAAAAATCTTTCATCCTTGGATTCAGAAAGACTTGCAGTTCATTCGTTTAGAGTTTTAAAAACTGGTTCCCATTCAAGTGATCCTCATATTGCGAGGAATATATCATGTCCTGTCTCTCCTATTGGGAGCCCTCTTTTGCATTCAAGGTCACCTCAACACCTGAATGGAAGAATGTCTCCTTCTCCTATATCCAGTCCTCGTACCACTTCTGGCCCATCCACGCCTTTGACAGGTGGCAGTGGTGCCATTCCATTTCCTCATCTAAAACCATCAGTTTACCTGCAAGAGGGATTTGGAAACGTTTCTAAGCCCCTAAACAATCCCTATTCCAACGGCCCCTCCTATCATGATCCAAATGCCGACATCTTTCGAGGGATGCAGCTAGGGTCTCACATATTCCCAGAAAGTGATGCTCTTGGAAAGCAGTTTGGGAGGACTGCTCATGTAGAATTGTATGATGGGCAGTCAGTCTTAGCTGATCGCGTCTCTCGGCAGCTCTTAAGGGATCAAGTGAAGATGAATCCATCTCTGGATCTTAGTCCCTCCTCTATGTTGCCCAGCCGGAACACTGGAATCTAA | 2679 | 45.58 | MPSWWGKSSSKEAKKKTNKESFIDTLHRKFKIPSEGKVSNRSGGSHRRCSDTISEKGSQSRAESRSPSPSKLVSRCQSFVERPNAQPLPLPGRHPASVGRTDSGISISTKQRLEKGSKSSFLPLPRPRCIGGRPDPTDLDGDFVASVYSEGSTDSEDAADSHHRSPQATDYDNGTRTAASIFSSVMLKDQSPVAHVNAREAQKPANLLFSNHISPTSPKRRPLSSHVPNLQVPYHGAFGSAPDSSMSSPSRSPLRAFGTDQGLNSAFWAGKPYSDVTLLGSGQCSSPGSGQNSGHNSMGGDMSGQLFWQPSRGSPEYSPIPSPRMTSPGPSSRIHSGAVTPLHPRAGGAASESQTSWPDEGKQQSHRLPLPPVAVSSSSPFSHSNSPAASPSVPRSPGRAEAPTSPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLGQEIVLLSRLCHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQLGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIRNSNGCNLAVDIWSLGCTVLEMATTKPPWSQFEGVAAMFKIGNSKDLPAIPDHLSDEGKDFVRQCLQRNPLHRPTAAQLLEHPFVKNAAPLERPILSPETSDPPPGVTNGVKSLGIGHAKNLSSLDSERLAVHSFRVLKTGSHSSDPHIARNISCPVSPIGSPLLHSRSPQHLNGRMSPSPISSPRTTSGPSTPLTGGSGAIPFPHLKPSVYLQEGFGNVSKPLNNPYSNGPSYHDPNADIFRGMQLGSHIFPESDALGKQFGRTAHVELYDGQSVLADRVSRQLLRDQVKMNPSLDLSPSSMLPSRNTGI* | 893 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 17707491 | 17719297 | - | Vvi16g727 | Vvi16g727 | 778376 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 742 | 782 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 55 | 81 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 101 | 116 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 9 | 54 | - | - | |
Vvi16g727 | 892 | SUPERFAMILY | Protein kinase-like (PK-like) | 408 | 754 | IPR011009 | - | |
Vvi16g727 | 892 | ProSiteProfiles | Protein kinase domain profile. | 410 | 666 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g727 | 892 | CDD | STKc_MEKK1_plant | 409 | 666 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 239 | 259 | - | - | |
Vvi16g727 | 892 | Gene3D | Transferase(Phosphotransferase) domain 1 | 408 | 682 | - | - | |
Vvi16g727 | 892 | SMART | serkin_6 | 410 | 666 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 745 | 777 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 155 | 169 | - | - | |
Vvi16g727 | 892 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA | 1 | 814 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 873 | 892 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 1 | 174 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 278 | 414 | - | - | |
Vvi16g727 | 892 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 1 | 814 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 278 | 312 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 241 | 259 | - | - | |
Vvi16g727 | 892 | Pfam | Protein kinase domain | 411 | 666 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 370 | 392 | - | - | |
Vvi16g727 | 892 | MobiDBLite | consensus disorder prediction | 875 | 892 | - | - | |
Vvi16g727 | 892 | ProSitePatterns | Protein kinases ATP-binding region signature. | 416 | 439 | IPR017441 | GO:0005524 |
Event-related genes

Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76278 | PF00069 | Pkinase | 8.10E-70 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi16g727 | K20717 | - | vvi:100242348 | 1707.96 |