Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g727 ATGCCTTCATGGTGGGGAAAATCATCATCCAAAGAAGCAAAGAAGAAAACAAACAAGGAAAGTTTCATCGACACATTACATCGAAAATTTAAGATTCCATCTGAAGGTAAGGTGAGCAATAGATCAGGAGGGTCTCATAGACGGTGCAGTGATACAATATCAGAGAAGGGATCTCAATCCCGAGCAGAATCAAGATCACCATCACCTTCCAAACTAGTGTCAAGATGTCAAAGTTTTGTTGAAAGGCCTAATGCCCAACCACTTCCACTTCCTGGTCGGCACCCTGCAAGTGTGGGTCGTACTGATTCTGGAATCAGTATATCAACAAAACAAAGACTGGAAAAAGGCTCCAAGTCATCCTTTCTTCCTCTCCCAAGACCCAGATGCATTGGGGGCAGACCCGATCCTACAGATTTAGATGGTGATTTTGTTGCTTCAGTTTATAGCGAAGGTTCCACTGATAGTGAAGATGCAGCTGACTCACATCATCGTAGTCCCCAGGCAACTGACTATGATAATGGGACTAGAACTGCTGCAAGCATATTTTCTAGTGTAATGCTCAAGGATCAGTCACCTGTTGCTCATGTAAACGCAAGGGAGGCACAAAAACCAGCTAATCTTTTGTTTAGTAATCATATTTCCCCTACATCACCTAAACGGAGGCCTTTAAGCAGCCATGTACCAAATTTACAGGTCCCTTATCATGGTGCTTTCGGCAGTGCTCCAGACAGCTCAATGTCAAGTCCTTCAAGAAGTCCATTGAGAGCATTTGGCACTGACCAAGGTTTGAACTCTGCTTTCTGGGCTGGGAAACCTTATTCAGATGTTACTTTACTTGGATCTGGCCAATGCTCCAGTCCAGGTTCAGGTCAGAATTCTGGGCACAATTCAATGGGAGGAGATATGTCAGGACAGTTGTTTTGGCAACCCAGCAGGGGCAGCCCGGAGTATTCTCCTATACCTAGTCCCAGAATGACAAGCCCTGGTCCCAGCTCCAGAATTCATAGTGGTGCAGTCACACCTCTTCATCCCAGAGCTGGAGGAGCAGCCTCTGAATCCCAGACAAGCTGGCCAGATGAGGGGAAACAACAAAGCCACCGGTTGCCCCTTCCTCCTGTAGCAGTTTCTTCTTCTTCACCTTTCTCTCATTCAAATTCACCAGCAGCATCTCCCTCTGTCCCACGCAGTCCAGGAAGAGCAGAGGCTCCAACAAGCCCAGGCTCTCGCTGGAAAAAGGGAAAGTTGCTGGGAAGAGGCACATTTGGACATGTTTATGTTGGCTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACACTATTTTCAGATGATGCAAAGTCAAAGGAAAGTGCAAAACAGTTGGGGCAAGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGGTTGGTGACAAACTTTATATATACTTGGAGTATGTATCTGGTGGCTCCATCTATAAACTTCTTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGGGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCATATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGTTTGAAGGGGTTGCTGCAATGTTCAAGATTGGGAATAGTAAGGACCTCCCAGCAATTCCTGATCACCTTTCAGATGAAGGTAAGGATTTTGTAAGGCAGTGCTTGCAACGAAATCCACTACATCGTCCAACAGCTGCTCAGCTCTTGGAGCATCCTTTCGTGAAAAATGCTGCACCTCTGGAAAGACCTATTTTGTCCCCTGAAACTTCAGATCCACCTCCTGGAGTTACCAATGGAGTGAAATCTCTGGGAATCGGACATGCTAAAAATCTTTCATCCTTGGATTCAGAAAGACTTGCAGTTCATTCGTTTAGAGTTTTAAAAACTGGTTCCCATTCAAGTGATCCTCATATTGCGAGGAATATATCATGTCCTGTCTCTCCTATTGGGAGCCCTCTTTTGCATTCAAGGTCACCTCAACACCTGAATGGAAGAATGTCTCCTTCTCCTATATCCAGTCCTCGTACCACTTCTGGCCCATCCACGCCTTTGACAGGTGGCAGTGGTGCCATTCCATTTCCTCATCTAAAACCATCAGTTTACCTGCAAGAGGGATTTGGAAACGTTTCTAAGCCCCTAAACAATCCCTATTCCAACGGCCCCTCCTATCATGATCCAAATGCCGACATCTTTCGAGGGATGCAGCTAGGGTCTCACATATTCCCAGAAAGTGATGCTCTTGGAAAGCAGTTTGGGAGGACTGCTCATGTAGAATTGTATGATGGGCAGTCAGTCTTAGCTGATCGCGTCTCTCGGCAGCTCTTAAGGGATCAAGTGAAGATGAATCCATCTCTGGATCTTAGTCCCTCCTCTATGTTGCCCAGCCGGAACACTGGAATCTAA 2679 45.58 MPSWWGKSSSKEAKKKTNKESFIDTLHRKFKIPSEGKVSNRSGGSHRRCSDTISEKGSQSRAESRSPSPSKLVSRCQSFVERPNAQPLPLPGRHPASVGRTDSGISISTKQRLEKGSKSSFLPLPRPRCIGGRPDPTDLDGDFVASVYSEGSTDSEDAADSHHRSPQATDYDNGTRTAASIFSSVMLKDQSPVAHVNAREAQKPANLLFSNHISPTSPKRRPLSSHVPNLQVPYHGAFGSAPDSSMSSPSRSPLRAFGTDQGLNSAFWAGKPYSDVTLLGSGQCSSPGSGQNSGHNSMGGDMSGQLFWQPSRGSPEYSPIPSPRMTSPGPSSRIHSGAVTPLHPRAGGAASESQTSWPDEGKQQSHRLPLPPVAVSSSSPFSHSNSPAASPSVPRSPGRAEAPTSPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLGQEIVLLSRLCHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQLGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIRNSNGCNLAVDIWSLGCTVLEMATTKPPWSQFEGVAAMFKIGNSKDLPAIPDHLSDEGKDFVRQCLQRNPLHRPTAAQLLEHPFVKNAAPLERPILSPETSDPPPGVTNGVKSLGIGHAKNLSSLDSERLAVHSFRVLKTGSHSSDPHIARNISCPVSPIGSPLLHSRSPQHLNGRMSPSPISSPRTTSGPSTPLTGGSGAIPFPHLKPSVYLQEGFGNVSKPLNNPYSNGPSYHDPNADIFRGMQLGSHIFPESDALGKQFGRTAHVELYDGQSVLADRVSRQLLRDQVKMNPSLDLSPSSMLPSRNTGI* 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17707491 17719297 - Vvi16g727 Vvi16g727 778376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g727 892 MobiDBLite consensus disorder prediction 742 782 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 55 81 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 101 116 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 9 54 - -
Vvi16g727 892 SUPERFAMILY Protein kinase-like (PK-like) 408 754 IPR011009 -
Vvi16g727 892 ProSiteProfiles Protein kinase domain profile. 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g727 892 CDD STKc_MEKK1_plant 409 666 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 239 259 - -
Vvi16g727 892 Gene3D Transferase(Phosphotransferase) domain 1 408 682 - -
Vvi16g727 892 SMART serkin_6 410 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g727 892 MobiDBLite consensus disorder prediction 745 777 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 155 169 - -
Vvi16g727 892 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 1 814 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 873 892 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 1 174 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 278 414 - -
Vvi16g727 892 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 1 814 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 278 312 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 241 259 - -
Vvi16g727 892 Pfam Protein kinase domain 411 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g727 892 MobiDBLite consensus disorder prediction 370 392 - -
Vvi16g727 892 MobiDBLite consensus disorder prediction 875 892 - -
Vvi16g727 892 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g309 Vvi16g727 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76278 PF00069 Pkinase 8.10E-70 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g727 K20717 - vvi:100242348 1707.96