Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g728 ATGGCTGTTTCTGCAAAGCTGGTTCTAGGCTCAATTGCCTTTGCAATATTCTGGGTGTTGGCGGTTTTTCCTGCTGTCCCTTTCCTACCTATTGGGAGGACTGCAGGGTCTCTCCTGGGGGCAATGCTCATGGTCAGTTTTCGTGTGATAACCCCAGATCAAGCATATGATGCCATTGATCTCCCAATCCTTGGTCTTCTGTTTGGGACTATGGTTGTCAGCATTTATCTTGAAAGAGCAGATATGTTCAAATATTTGGGTAAACTTCTCTCATGGAAAAGCTTAGGAGCCAAAGACTTACTATGTCGAATCTGCCTCATATCGGCCATTTCAAGTAGTCTTTTCACCAATGATACCACTTGTGTCGTCTTGACCGAATTTGTTCTGAAAATTGCAAGGCAGCATAATCTTCCACCCCATCCTTTCCTTTTAGCCCTTGCCTCAAGTGCAAATATTGGGTCTTCTGCAACTCCAATTGGCAACCCGCAAAATCTTGTTATAGCCCTCGAGAGTAAGATTTCATTCGGGGATTTCGTACTTGGAATTCTTCCTGCAATGCTTGTAGGAGTACTTGTGAATGCTTTAATTCTTCTTTGCATGTATTGGAGGTTTTCTGGGGACGAAAATCAAAATATACTTTCAAATGGGACTGCATCAATGGATGAACCAGGAGATGCAGTCTTTATGCAGTCTTTAGACGAAAAGGAAAATCCGACCACAAAATGGAAAAGGCTATTATGGAAACCATGTGTTTACCTTGTTACTATAGGAATGCTGATTTCTTTGCTCATGGGTCTCAATATGTCATGGACTGCAATTGCTGCTGCACTGGCTCTTGTAGTTCTTGATTTCAAGGATGCTCGGCCTTCCCTAGAGAAGGTCTCCTATTCCCTTTTGATTTTCTTCTGCGGAATGTTCATTACAGTTGATGGTTTCAACAAAACTGGAATCCCTAGCGCAGTATGGGACTTAATGGAGCCTTACGCAAAGATTGACCATGTTAGTGGGATCGCAGTTCTTGCTGTTGTCATACTTGTCCTGTCAAATGTGGCTTCTAATGTACCAACCGTTCTCTTGCTTGGAGCACGGGTGGCAGCATCAGCAGCTCAAATTTCCGCAGCCGAAGAGAAGAAGGCATGGCTGATCTTAGCTTGGGTCAGCACTGTGGCCGGAAACCTCTCCCTGTTGGGATCAGCTGCCAACTTGATAGTTTGTGAGCAGGCTCGCCGGGCTCAACACCTTGGGTACACTCTATCCTTCTGGAGGCATCTCAAATTTGGAGTTCCCGCCACTCTTGTAGTCACTGCCATTGGTTTGACACTAATAAGAGGATGA 1335 44.79 MAVSAKLVLGSIAFAIFWVLAVFPAVPFLPIGRTAGSLLGAMLMVSFRVITPDQAYDAIDLPILGLLFGTMVVSIYLERADMFKYLGKLLSWKSLGAKDLLCRICLISAISSSLFTNDTTCVVLTEFVLKIARQHNLPPHPFLLALASSANIGSSATPIGNPQNLVIALESKISFGDFVLGILPAMLVGVLVNALILLCMYWRFSGDENQNILSNGTASMDEPGDAVFMQSLDEKENPTTKWKRLLWKPCVYLVTIGMLISLLMGLNMSWTAIAAALALVVLDFKDARPSLEKVSYSLLIFFCGMFITVDGFNKTGIPSAVWDLMEPYAKIDHVSGIAVLAVVILVLSNVASNVPTVLLLGARVAASAAQISAAEEKKAWLILAWVSTVAGNLSLLGSAANLIVCEQARRAQHLGYTLSFWRHLKFGVPATLVVTAIGLTLIRG* 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17723467 17727425 - Vvi16g728 Vvi16g728 778377

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g728 444 Pfam Citrate transporter 25 390 IPR004680 GO:0016021|GO:0055085
Vvi16g728 444 PANTHER TRANSPORTER ARSB-RELATED 1 204 - -
Vvi16g728 444 PANTHER TRANSPORTER ARSB-RELATED 214 444 - -
Vvi16g728 444 PRINTS Arsenical pump membrane protein signature 107 131 IPR000802 GO:0015105|GO:0015700|GO:0016021
Vvi16g728 444 PRINTS Arsenical pump membrane protein signature 294 318 IPR000802 GO:0015105|GO:0015700|GO:0016021
Vvi16g728 444 PRINTS Arsenical pump membrane protein signature 339 361 IPR000802 GO:0015105|GO:0015700|GO:0016021
Vvi16g728 444 PRINTS Arsenical pump membrane protein signature 418 442 IPR000802 GO:0015105|GO:0015700|GO:0016021
Vvi16g728 444 CDD YbiR_permease 26 442 - -
Vvi16g728 444 PANTHER TRANSPORTER ARSB-RELATED 214 444 - -
Vvi16g728 444 PANTHER TRANSPORTER ARSB-RELATED 1 204 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g728 - - - qsu:111998961 653.284
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g304 Vvi16g728 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g728 . Blo15g00174 . . . Bpe07g00931 . . Cmo16g00125 Cmo18g01285 . . . . . . Cpe14g00099 Bhi01g01281 Tan01g0225 . . . . . . . . . . . . . . Cone14ag0071 Cone15ag0073 Lsi05g01213 . . Cme06g01018 . . Bda06g00691 . . . . Bma12g01114 . . . Cma16g00113 Cma18g01258 Car16g00101 Car18g01168 Cpe09g00078 . . . . . . . . Cla05g00894 Cam05g0979 Cec05g0984 Cco05g0982 Clacu05g0966 Cmu05g0924 Cre05g1008 . Csa03g01728 Chy06g00959 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003379 1 3 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 5 2 1 1 1 1 1 1 1 1 4 5 2 49