Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g730 ATGGCCTCGCCAATTTTCACTCCCACACTTTTCTTTTCATCACCCAGTACCACCAAATCAACCATCTATGCCCTTTCTTCTTCTTCTTCAATTCCACTCCCAAAAGGCCCCAGTTTTCACTTCTCGACTTTGGTTCCTCAACCGGGTCTTGGTCCTTTCTCCTCCTGGAATGGTCTAAGGCATCTGGGTATCTCTGTTAAACAAAAATCTCTCAAAATAGGAAGAAGAGGAAGGTGCAAAGGGAAAGTGGTTTATGCATCTCTGTTTGGGGTTGGGGCTCCTGAGGCTCTGGTTATTGGAGTGGTAGCTTTGTTGGTTTTTGGTCCCAAAGGTCTTGCTGAGGTTGCTCGGAATTTGGGAAAGACTTTGCGTGAATTTCAGCCCACAATTAAAGAGCTTCAAGAAGTTTCAAAGGAATTTAAGAGCACCCTTGAAAAGGAGATTGGTTTTGATGAGATTTCAAGTTCAATACAAGATACATACAGGCCCAGAACAACTAACCCTACTACCTCAACCCCTTCATCAAATGCTGGCATTGAGGATTCTGGGAATGTGGTTGACCCTAATGGTGCACCATCCCTGAATAAAGCGTACTCTAGTGAGGAGTACTTAAAGATCACCGAAGAGCAGCTGAAAGCATCTGCAGCCCAACAGCAGTCACAAACACCCCCTCCAGGAGAAAGCCAGTTGGAACCTCAAACTGAGCCTCTAGGTGCTGTTCAAGAAGGTGCTACTGCAATTCCTCCATCCAAGAACCCAAAAAGTGAGACCTGA 774 45.61 MASPIFTPTLFFSSPSTTKSTIYALSSSSSIPLPKGPSFHFSTLVPQPGLGPFSSWNGLRHLGISVKQKSLKIGRRGRCKGKVVYASLFGVGAPEALVIGVVALLVFGPKGLAEVARNLGKTLREFQPTIKELQEVSKEFKSTLEKEIGFDEISSSIQDTYRPRTTNPTTSTPSSNAGIEDSGNVVDPNGAPSLNKAYSSEEYLKITEEQLKASAAQQQSQTPPPGESQLEPQTEPLGAVQEGATAIPPSKNPKSET* 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17739768 17746645 + Vvi16g730 Vvi16g730 778379

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g730 257 TIGRFAM tatAE: twin arginine-targeting protein translocase, TatA/E family 90 135 IPR006312 GO:0016021|GO:0043953
Vvi16g730 257 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATB, CHLOROPLASTIC 1 257 - -
Vvi16g730 257 PANTHER SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATA, CHLOROPLASTIC 1 257 - -
Vvi16g730 257 MobiDBLite consensus disorder prediction 211 228 - -
Vvi16g730 257 MobiDBLite consensus disorder prediction 155 182 - -
Vvi16g730 257 MobiDBLite consensus disorder prediction 155 257 - -
Vvi16g730 257 Gene3D - 88 137 - -
Vvi16g730 257 Pfam mttA/Hcf106 family 91 141 IPR003369 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g730 - - - vvi:100254207 457.988
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g730 . . . Bda07g01889 . . . Bma14g02059 Cmo16g00122 . . . . . . . Cpe14g00097 Bhi01g01277 . . . . . . . . . . . . . . . . Cone15ag0071 Lsi05g01211 . . Cme06g01020 . Blo09g00078 . . . . . . . . . Cma16g00111 . Car16g00099 . . . . . . . . . . Cla05g00897 Cam05g0981 Cec05g0986 Cco05g0984 Clacu05g0969 Cmu05g0926 Cre05g1010 . Csa03g01732 Chy06g00963 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006454 1 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37