Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g741 ATGGAGACGCCGCTGCTCAACGGCGGCGCCGAAGAGGGATACGGTGGCGCGGACGGAGACTACCAGCCTTTGAGGAGCTGGAGGGAAGTGAGGTCAATGGTGTGGAAGGAGACAGTGAAGCTGTGGAGAGTTGCTGGGCCTTTGGCTTTCCAAATACTGTGTCAGTTCGGCACCAACTCGATGACCAGTGTGTTTGTGGGTCATATCGGAAACCTTCAGCTATCTGCTGTCTCCATTTCCCTCTCTGTCATTGGCACCTTCTCTTTTGGCTTCATGCTTGGTATGGGGAGTGCACTAGAGACCTTATGTGGACAAGCTTATGGTGCTGGACAAGTCCACTTGCTTGGGGTTTACTTGCAGAGATCATGGATAATTCTATTGGTAACCTGTGTCATCCTCTCGCCAGTATACGTATTTGCCACCCCAATCCTAAAGGTCCTTGGGCAAGAAGATGCCATAGCTGATCTTGCTGGACAATTCACTATTGAAACCATTCCTCAATTGTTCTCACTCGCCATCATCTTCCCCACCCAGAAGTTCCTTCAAGCCCAAAGCAAGGTGAATGTGCAAGCAACTATTGCTTTTGTGGCTCTAATCCTGCACATTGGAATGCTTTCGGTCTTCATTTTTGTGTTCGGTTGGGGCACGACTGGTGCAGCCATAGCTTATGACATATCGAATTGGGTGATTGCCGTGTCTCAAGTTGTCTATGCTATTGGTTGGTGCAAAGAAGGATGGACAGGATTAACATGGTCAGCTTTCAGGGATATTTGGGCTTTTGTTCGGCTTTCAATTGCCTCGGCTGTGATGCTTTGCCTAGAGATCTGGTATTTTACGATCATAGTCCTTCTCACTGGCCACCTTCAAAATGCAGTCATCGCAGTTGGGTCCCTTTCTATTTGCATGGCTTTTAATGGGTGGGAAGGCATGTTGTTCATTGGGATGAATGCTGCTCTGAGCATTCGGGTCTCCAATGAGCTCGGATATGGACATCCAAGAGCAGCCAAGTTCTCTGTCTATGTTGCAGTCTCTCAGTCTCTCCTTATTGGGATTTTGTGCATGGTGGTGGTCTTGTTAGCTAGAGACTACATTGCCTTCATTTTCACTAGCAACAAGGAAATGCAAGAGGCTGTTTCTAACCTAGCATATCTTCTTGGTGCCACCATGCTTCTGAACAGTATGCAGCCAGTCTTATCAGGCGTTGCCGTCGGAAGCGGATGGCAAGCCTTGGTGGCTTACATCAACTTGGGTTGCTATTACATTATTGGGGTCCCTCTCGGCTGCCTTCTCGGTTACCTAGCAAAATTCGGAGTGAAAGGACTTTGGGGGGGCATGATATGTGGAACAGCTTTGCAGACATTGATTCTGTTGTTCATAGTTTACAGAACCAATTGGAACAAGGAGGTGGAGCAAACAACAGAGAGGATGCAGAAGTGGGGAGGAGTACAGATTGAAACCGAGAAGACGAGTGATGATGTCTGA 1482 48.11 METPLLNGGAEEGYGGADGDYQPLRSWREVRSMVWKETVKLWRVAGPLAFQILCQFGTNSMTSVFVGHIGNLQLSAVSISLSVIGTFSFGFMLGMGSALETLCGQAYGAGQVHLLGVYLQRSWIILLVTCVILSPVYVFATPILKVLGQEDAIADLAGQFTIETIPQLFSLAIIFPTQKFLQAQSKVNVQATIAFVALILHIGMLSVFIFVFGWGTTGAAIAYDISNWVIAVSQVVYAIGWCKEGWTGLTWSAFRDIWAFVRLSIASAVMLCLEIWYFTIIVLLTGHLQNAVIAVGSLSICMAFNGWEGMLFIGMNAALSIRVSNELGYGHPRAAKFSVYVAVSQSLLIGILCMVVVLLARDYIAFIFTSNKEMQEAVSNLAYLLGATMLLNSMQPVLSGVAVGSGWQALVAYINLGCYYIIGVPLGCLLGYLAKFGVKGLWGGMICGTALQTLILLFIVYRTNWNKEVEQTTERMQKWGGVQIETEKTSDDV* 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17836934 17840142 - Vvi16g741 Vvi16g741 778390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g741 493 Pfam MatE 267 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g741 493 Pfam MatE 47 203 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g741 493 PANTHER PROTEIN DETOXIFICATION 16 475 - -
Vvi16g741 493 CDD MATE_eukaryotic 37 471 IPR045069 GO:0042910|GO:1990961
Vvi16g741 493 TIGRFAM matE: MATE efflux family protein 47 442 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi16g741 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 475 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g741 K03327 TC.MATE, SLC47A, norM, mdtK, dinF; multidrug resistance protein, MATE family - vvi:100268149 964.14
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g741 . . . Bda07g01895 Bpe03g00147 . . . . . . . . Car15g00995 . . . . . . . . . . . . . . . . . . . . . . . Chy09g01381 . . Blo09g00070 . . . . . . . . . . . . . . Cpe13g00267 Bhi12g00020 . . . . . Lcy12g0048 . . . . . . . Lsi09g00087 . . Cme09g01925
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000562 2 4 7 5 5 3 4 3 3 4 3 3 4 3 4 4 3 5 4 3 3 5 3 3 3 3 3 3 3 3 108