Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g742 ATGGTTATTCGTCCTTACGGTTACGCCATTTGGGAAGCAATTCAGGATTATTTGAACGTGAAATTCAAGGAGACTGGCCACAGCAACATGTATTTCCCGCAGTTTATACCATACTCATTTATTGAAAAAGAAGCAAGCCATGTTGAAGGTTTCAGTCCAGAATTAGCACTTGTGACAATTGGAGGGGGAAAGGAACTTGAAGAAAAACTTGTGGTTCGACCTACAAGTGAAACCATAGTAAACCACATGTTCACTCAGTGGATTCATAGCTACCGTGATCTTCCTCTCATGATTAATCAGTGGGCAAATGTTACGAGATGGGAGATGCGGACAAAACCATTTGTGAGGACTCTTGAATTTCTCTGGCAAGAGGGCCACACTGCTCATGCCACCCCTGAAGAGGCAGAAAAAGAGGCATTACAGATGATTGATGTCTATACAAAATTTGCTTATGAGCAAGCTGCAATACCTGTTATTACAGGTCGAAAATCAAAAGTGGAGACATTTGCTGGTGCTGTTAGGACCTATACAATTGAGGCTATGATGGGTGATCGGAAGGCTCTACAGGCTGGAACCAGCCACAACCTTGGACAGAATTTTTCTCGTGCTTTTGGAACACAGTTCACTGATGAAAATGGACAAAGACAACACATATGGCAGACATCATGGGCAGTCAGCACCCGTTTTATTGGTGGTATCATCATGACCCATGGAGATGATGCTGGTTTGATGCTTCCCCCAAAAATTGCTCCAATACAGGTGGTAATCATACCAATCTGGAAGAAGGCTGATGAAAAAACAGGAGTTCTCAATGCTGCATCATCTGTGACAGAAGTTTTAAAATCTGCAAATATTAAAGTTAAAGTTGATGACTCAGATCAGAGAACCCCTGGATGGAAATTCAATTTCTGGGAGATGAAGGGAGTTCCTTTAAGGATTGAAATTGGTCCTCGTGATGTTTCAAGCGGGAGTGTCGTCATATCTAGGAGAGATGTTCCTGGAAAGCAAGGGAAAGTTTTTGGGATATCTATGGAACCTTCAATTTTGGTAGCATATGTCAAAGATAAGTTGGATGAGATTCAGTCATCACTTTTGGAAAGGGCAACGTCCTATCGAGATAGTAACATTGTGGATGTCAGCTCCTATGATGAGCTGAAAGAGGCCATTTCTCAGGGAAAATGGGCAAGGGGTCCTTGGTCGGCTAGTGATGCAGAGGAACTAAGAGTGAAAGAAGAAACAGGGGCAACGATTCGGTGTTTCCCTTTTGAACAGCCTCAAGGCATGAAAACATGCCTGATGACAGGCGATCCAGCTGAAGAAGTTGCACTTTTCGCAAAATCGTATTAA 1347 42.84 MVIRPYGYAIWEAIQDYLNVKFKETGHSNMYFPQFIPYSFIEKEASHVEGFSPELALVTIGGGKELEEKLVVRPTSETIVNHMFTQWIHSYRDLPLMINQWANVTRWEMRTKPFVRTLEFLWQEGHTAHATPEEAEKEALQMIDVYTKFAYEQAAIPVITGRKSKVETFAGAVRTYTIEAMMGDRKALQAGTSHNLGQNFSRAFGTQFTDENGQRQHIWQTSWAVSTRFIGGIIMTHGDDAGLMLPPKIAPIQVVIIPIWKKADEKTGVLNAASSVTEVLKSANIKVKVDDSDQRTPGWKFNFWEMKGVPLRIEIGPRDVSSGSVVISRRDVPGKQGKVFGISMEPSILVAYVKDKLDEIQSSLLERATSYRDSNIVDVSSYDELKEAISQGKWARGPWSASDAEELRVKEETGATIRCFPFEQPQGMKTCLMTGDPAEEVALFAKSY* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17881723 17898213 + Vvi16g742 Vvi16g742 778391

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g742 448 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 1 246 IPR006195 -
Vvi16g742 448 Hamap Proline--tRNA ligase [proS]. 1 448 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 SUPERFAMILY C-terminal domain of ProRS 376 448 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 SMART ProRS_C_1_2 382 448 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 CDD ProRS_core_arch_euk 1 236 IPR033721 -
Vvi16g742 448 Pfam Anticodon binding domain 253 336 IPR004154 -
Vvi16g742 448 Gene3D - 377 448 IPR017449 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 Gene3D - 247 372 IPR036621 -
Vvi16g742 448 CDD ProRS_anticodon_zinc 242 448 - -
Vvi16g742 448 SUPERFAMILY Class II aaRS and biotin synthetases 2 240 IPR045864 -
Vvi16g742 448 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 65 234 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vvi16g742 448 Gene3D Bira Bifunctional Protein; Domain 2 1 246 IPR045864 -
Vvi16g742 448 PANTHER BNAC09G28510D PROTEIN 1 448 - -
Vvi16g742 448 TIGRFAM proS_fam_I: proline--tRNA ligase 1 448 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 PRINTS Prolyl-tRNA synthetase signature 29 47 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 PRINTS Prolyl-tRNA synthetase signature 70 81 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 PRINTS Prolyl-tRNA synthetase signature 100 108 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 PRINTS Prolyl-tRNA synthetase signature 109 120 IPR002316 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 PANTHER PROLYL-TRNA SYNTHETASE 1 448 IPR004499 GO:0004827|GO:0005524|GO:0005737|GO:0006433
Vvi16g742 448 SUPERFAMILY Class II aaRS ABD-related 242 374 - -
Vvi16g742 448 Pfam Prolyl-tRNA synthetase, C-terminal 382 448 IPR016061 GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g742 K01881 PARS, proS; prolyl-tRNA synthetase [EC:6.1.1.15] - vvi:100262997 907.516
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g742 . . Bda05g00086 . Bpe03g00272 . Bma10g01239 . . Cmo18g01292 . . . . Sed11g1514 . . Bhi01g01267 Tan01g0211 Cmetu11g1479 . Hepe07g0133 . . . . . . . . . Cone1ag1180 Cone5ag0884 . . Lsi05g01205 . . . Blo07g00389 . . . . . . . . . . . Cma18g01263 . Car18g01173 Cpe09g00073 . . . . . . . . Cla05g00903 Cam05g0987 Cec05g0993 Cco05g0991 Clacu05g0975 Cmu05g0932 Cre05g1017 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010881 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 31