Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g753 ATGGTACGTCCCAGAAATGCTACTTTCTCCTGCAGGACCCTCCAAATTCAAACACTCGCCTCGAACTTGGAAGAGAGCAGTAGAGTATCATTTTCAACGAGATCGCGTGCGGACATAAAAAATGAAGAATCTTTCGTGTTGGGCAATCGAAAAGGTTGGATTCACTTTGTGGGTATTGGAGGTAGTGGGTTGTCAGCTCTCGCTATGCTCGCTCTTAAACAAGGGTTTGAGGTTAGTGGCTCGGATATTGTGTGGAGCAGCTTCTTGGATGGACTGAAAGAGACTGGGGCACAATTGCATTTAGGTCATTCAGAGTCAAACATACAGAGGAACAACGGGTCCAGCTTACCTGATGCAATTGTTGTTTCAAGTGCTATTCCCCAAGATAATCTAGAGATTTTACATGCCAAGTCTGTTGGAATACCAGTATATAAGAGAGGTAATTGGTTGGGAAAGCTCACAGAGCACTACAATCTCATTGCTGTTAGCGGTACTCATGGGAAGAGTACAACAGCAAGTATGCTTGCTTATGTTTTAAAATCAATGGGAGATGATCTTACAGCCGTAGTTGGGGCACAAGTGCCACAGTTTGGAGGAGGAAATATTATGTCAGGAAGTGGTCGCAATTTTGTTTTGGAGGCTGATGAATATGACTGTTGCTTCCTGGGATTACTGCCTTACATAGCTGTGGTTACAAATGTTGATTGGGAGCATGTTGATATCTTTCCAGATGAGGAAGCAGTCAAAGCTATTTTTAGGAGGTTCCTGAAACAAATCAGGGTTGGTGGACATCTCATTTTATGTGGGGATAGTGCAGGTGCATGCTCATTGCTGGATGACACAGAAGAATCAACTGTAGCAGACCATTCAAGTGGGAAGTTGTCAACTCTGAATTCAGATAAATGCAGTGATGGCTACAGAATAACAACTTTTGGAATTTCAAGAACTAATGAATGGCATGCATTATCGATTCGTCCTAACTCACAAGGTGGTAGTGATTTTGTACTGTGTCACAGGGGTTATCCAGTGGCAAACATCACCCTACAGATACCCGGAGTTCATAATGTTCTCAATTCATTAGCAGTTATTGCCACAGTGATGGCACTGGTTAGTGATGGAAGACAAAGTTATGAATCAATCAATTGTGTGAAGATACACTTGAACAATTTTGTTGGTGTTTCTAGACGTTTTGAGCTGATAGGTACTGTATGTGGATGCCTCATATATGACGACTATGCTCACCATCCAACGGAGGTTCGGGCAGTTCTCCAAGCAGCTCGCCAAAGGTTCCCATTGAAGGCTCTTTTGGTGGTATTTCAGCCTCATACTTACAGTCGTCTGGCAGCACTGAAGAGTGACTTTGCCACTGCATTCAGTGATGCAGACCAAGTTTTGGTTACAGAGATTTATGCCGCCAGAGAAACTAATGTTTGGAATGTCAGCGGAAAGGATCTGGCTACTTCTATCATTGGGCCACCATCTGAGTACATCCCTTCCCTGGGGGATGTGGTAGACAAGTTAGCGCATCAGATTTCCTTGGAACCTGATCGAGAAACAGTTGTGTTTACACTTGGAGCAGGTGATATTACTACCGTGGGGCCAAAGTTGCTCCATGAATTGCAGGGAAGGCTACAAAAGCCGAGGAGGAGGTCGAGGTTGCGAAGGCCGACGTCGGCTGATGACGACGACGCGGGGGGTGTCCCCGGCGAGCTGGGGTTTGCGGTTCCACTGAAGAACCGATTGAATGGTAGTGGGGTTGTGAGGTTTGGGCTTGAAGTTTGGCTTGGAGGGTTTGAGGGTTTTGGGTTCCTTGATAATATCATCATAACTTTCGAAGTCACGCGTGGTACCACACAATGCCAAATCAAATACGACAAGTAA 1881 45.08 MVRPRNATFSCRTLQIQTLASNLEESSRVSFSTRSRADIKNEESFVLGNRKGWIHFVGIGGSGLSALAMLALKQGFEVSGSDIVWSSFLDGLKETGAQLHLGHSESNIQRNNGSSLPDAIVVSSAIPQDNLEILHAKSVGIPVYKRGNWLGKLTEHYNLIAVSGTHGKSTTASMLAYVLKSMGDDLTAVVGAQVPQFGGGNIMSGSGRNFVLEADEYDCCFLGLLPYIAVVTNVDWEHVDIFPDEEAVKAIFRRFLKQIRVGGHLILCGDSAGACSLLDDTEESTVADHSSGKLSTLNSDKCSDGYRITTFGISRTNEWHALSIRPNSQGGSDFVLCHRGYPVANITLQIPGVHNVLNSLAVIATVMALVSDGRQSYESINCVKIHLNNFVGVSRRFELIGTVCGCLIYDDYAHHPTEVRAVLQAARQRFPLKALLVVFQPHTYSRLAALKSDFATAFSDADQVLVTEIYAARETNVWNVSGKDLATSIIGPPSEYIPSLGDVVDKLAHQISLEPDRETVVFTLGAGDITTVGPKLLHELQGRLQKPRRRSRLRRPTSADDDDAGGVPGELGFAVPLKNRLNGSGVVRFGLEVWLGGFEGFGFLDNIIITFEVTRGTTQCQIKYDK* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 17990805 18010705 - Vvi16g753 Vvi16g753 778402

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g753 626 Gene3D - 147 394 IPR036565 GO:0005524|GO:0009058
Vvi16g753 626 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 392 538 IPR036615 GO:0009058|GO:0016881
Vvi16g753 626 Pfam Mur ligase family, glutamate ligase domain 393 475 IPR004101 GO:0009058|GO:0016881
Vvi16g753 626 PANTHER UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE-RELATED 49 544 - -
Vvi16g753 626 PANTHER UDP-N-ACETYLMURAMATE--L-ALANINE LIGASE 49 544 - -
Vvi16g753 626 Gene3D - 47 145 - -
Vvi16g753 626 SUPERFAMILY MurCD N-terminal domain 54 144 - -
Vvi16g753 626 MobiDBLite consensus disorder prediction 542 566 - -
Vvi16g753 626 SUPERFAMILY MurD-like peptide ligases, catalytic domain 143 369 IPR036565 GO:0005524|GO:0009058
Vvi16g753 626 Gene3D - 395 552 IPR036615 GO:0009058|GO:0016881
Vvi16g753 626 Pfam Mur ligase family, catalytic domain 54 157 IPR000713 GO:0009058|GO:0016881
Vvi16g753 626 TIGRFAM murC: UDP-N-acetylmuramate--L-alanine ligase 54 536 IPR005758 GO:0008763
Vvi16g753 626 Pfam Mur ligase middle domain 162 365 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vvi16g753 626 Hamap UDP-N-acetylmuramate--L-alanine ligase [murC]. 51 542 IPR005758 GO:0008763
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g753 - - - vvi:100855090 1072.77
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g753 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1190 Cone5ag0890 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0023664 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 3