Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g756 ATGTTGAATGGACTAGTATCAGGTGGGGAACTTCCTGAGAAGCTCCATCAAGTGGCCTCATCACACACCACTTGTTTTGAGAGGCCATTTACTTGTCCAGTAGGTGACTGCCATTCCAGCTATAGAAGAAAAGTTCACTTGACCCGCCTCCTTCTTAAGCACCAAGGGAAACTCTTCACATGCCCTGTTCAGAATTGCAACAGTAGATTTGCTTTTCAAAGCAGCATCAAAAGGCATGTTAAGGAATTTCATGATGAGTCTCCCCCTAACAATGTTGGTTCCAAACAACAAACAATACGTATGCTCAGAAATTGGGTGTGGAAAGGTGTTCAAATTTGCTTCAAAGTTGCAGACGCATGA 360 43.33 MLNGLVSGGELPEKLHQVASSHTTCFERPFTCPVGDCHSSYRRKVHLTRLLLKHQGKLFTCPVQNCNSRFAFQSSIKRHVKEFHDESPPNNVGSKQQTIRMLRNWVWKGVQICFKVADA* 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18021205 18021998 - Vvi16g756 Vvi16g756 778405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g756 119 SMART c2h2final6 59 84 IPR013087 -
Vvi16g756 119 SMART c2h2final6 30 54 IPR013087 -
Vvi16g756 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 84 IPR013087 -
Vvi16g756 119 PANTHER ZINC FINGER PROTEIN 12 91 - -
Vvi16g756 119 Gene3D Classic Zinc Finger 55 99 - -
Vvi16g756 119 PANTHER ZINC FINGER PROTEIN 423 HOMOLOG 12 91 - -
Vvi16g756 119 Gene3D Classic Zinc Finger 27 54 - -
Vvi16g756 119 SUPERFAMILY beta-beta-alpha zinc fingers 57 85 IPR036236 -
Vvi16g756 119 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 89 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g756 K09191 GTF3A; general transcription factor IIIA - vvi:100260239 128.257
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14155 None None None None Vvi TF