Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g762 ATGGCGGATGTGCAGATGGGAGAGGCCGAAACCTTCGCCTTCCAGGCTGAGATCAATCAGCTTCTGAGTCTCATCATCAACACTTTCTACAGCAACAAGGAGATCTTCCTTCGTGAGCTCATCAGCAACGCCTCTGATGCCTTGGATAAGATTCGATTCGAGAGCCTGACGGACAAGAGCAAATTGGATGCGCAGCCCGAGCTGTTCATCAGGATTGTACCCGACAAAGTTAACAAGACCCTCTCTATTATTGACAGTGGCATCGGAATGACCAAAGCAGATCTGGTGAACAATTTGGGAACAATTGCGAGGTCTGGAACCAAGGAGTTCATGGAGGCGTTGCAGGCTGGAGCAGATGTGAGCATGATAGGCCAATTCGGTGTAGGGTTTTACTCAGCCTACCTAGTTGCAGAGAAGGTCATTGTGACAACAAAGCACAATGACGATGAGCAATACATCTGGGAGTCTCAAGCTGGTGGGTCATTCACTGTTACCAGGGACGTTTCTGGAGAGCCGCTTGGGAGAGGAACCAAGATCACCCTCTTCCTCAAGGACGACCAGGTGGAGTACTTGGAAGAAAGGCGAATCAAAGACCTTGTGAAGAAGCATTCTGAGTTCATTAGCTACCCAATCTATCTCTGGACTGAGAAGACAACTGAGAAAGAGATCAGTGATGATGAGGATGATGAGCCCAAGAAGGATGAGGAAGGAGCTCTCATCAACAAGCAGAAGCCCATCTGGCTGCGCAAGCCAGAGGAGATCACCAAGGAGGAGTATGCCTCATTCTACAAGAGCCTGACCAATGACTGGGAGGACTATCTTGCTGTTAAGCACTTCTCGGTAGAGGGACAGCTCGAGTTCAAAGCTATCCTCTTTCTTTATGTGAGGAGGGTGTTCATTATGGACAATTGCGAGGAGCTCATTCCAGAGTACCTCGGATTTATTGCGGAGAACAAGGATGATTACAGCAAGTTCTATGATGCTTTCTCCAAGAACTTGAAGTTGGGTATTCATGAAGACAGCCAGAACAGAGCTAAACTGGCTGATCTGCTCCGATATTACTCGACCAAAAGTGGTGAAGAGATGACAAGTTTGAAGGACTATGTCACCAGGATGAAGGAGGGCCAGAAGGACATCTACTACATCACTGGTGAGAGCAAGAAGGCAGTGGAGAACTCTCCATTCTTGGAGAGGCTAAAGAAGAAAGGATACGAAAACCTCTGCAAGACCATCAAGGACATTTTGGGAGACAAGGTTGAGAAGGTGGTGGTCTCTGATAGAATTGTGGACTCCCCATGTTGCTTAGTGACTGGGGAGTATGGATGGACTGCAAACATGGAGAGGATCATGAAGGCTCAGGCATTGAGGGACAGTAGCATGGGTGCTTACATGAAGAGGGCTGAGGTTGACAAGAACGATAAATCAGTGAAGGACCTTGTGATGCTCCTATATGAGACCGCCCTCCTGACTTCTGGGTTCAGTCTAGATGATCCAAACACATTTGCAGGTAGAATCCACAGGATGTTGAAGTTGGGTCTGAGCATTGATGAGGGGGAAGAGGTTGGTGAGGAGGATGCTGACATGCCTCCTTTGGAGGAGGATGGCAATGAGGAGAGCAAGATGGAGGAAGTGGACTGA 1638 48.35 MADVQMGEAETFAFQAEINQLLSLIINTFYSNKEIFLRELISNASDALDKIRFESLTDKSKLDAQPELFIRIVPDKVNKTLSIIDSGIGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYIWESQAGGSFTVTRDVSGEPLGRGTKITLFLKDDQVEYLEERRIKDLVKKHSEFISYPIYLWTEKTTEKEISDDEDDEPKKDEEGALINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDYLAVKHFSVEGQLEFKAILFLYVRRVFIMDNCEELIPEYLGFIAENKDDYSKFYDAFSKNLKLGIHEDSQNRAKLADLLRYYSTKSGEEMTSLKDYVTRMKEGQKDIYYITGESKKAVENSPFLERLKKKGYENLCKTIKDILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGAYMKRAEVDKNDKSVKDLVMLLYETALLTSGFSLDDPNTFAGRIHRMLKLGLSIDEGEEVGEEDADMPPLEEDGNEESKMEEVD* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18054146 18057038 + Vvi16g762 Vvi16g762 778411

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g762 545 SUPERFAMILY HSP90 C-terminal domain 406 509 IPR037196 -
Vvi16g762 545 SUPERFAMILY Ribosomal protein S5 domain 2-like 242 408 IPR020568 -
Vvi16g762 545 CDD HATPase_Hsp90-like 19 207 - -
Vvi16g762 545 PIRSF HSP90_HTPG 404 545 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 PIRSF HSP90_HTPG 315 410 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 PIRSF HSP90_HTPG 1 316 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90-1 239 315 - -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90-1 404 544 - -
Vvi16g762 545 Gene3D - 241 291 - -
Vvi16g762 545 Gene3D - 317 352 - -
Vvi16g762 545 Gene3D - 292 316 - -
Vvi16g762 545 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Vvi16g762 545 Pfam Hsp90 protein 404 537 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Pfam Hsp90 protein 315 405 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Pfam Hsp90 protein 189 235 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Pfam Hsp90 protein 293 315 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Pfam Hsp90 protein 234 292 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Gene3D - 467 518 IPR037196 -
Vvi16g762 545 SMART HKATPase_4 32 187 IPR003594 -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 238 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 MobiDBLite consensus disorder prediction 518 545 - -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 315 406 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90-1 315 406 - -
Vvi16g762 545 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 10 218 IPR036890 -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 404 544 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Gene3D - 8 233 IPR036890 -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 239 315 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Vvi16g762 545 Gene3D - 385 466 IPR037196 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Vvi16g762 545 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Vvi16g762 545 PANTHER HEAT SHOCK PROTEIN 90-1 1 238 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g762 K04079 HSP90A, htpG; molecular chaperone HtpG - vvi:100257736 961.059
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g33 Vvi16g762 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102