Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g765 ATGGCTCTGCCCGGACTCGGACCCTTCGCCACCACCGCCGCCGCTGCCGCTGCTGCAACCACCTCGTCTTTGGAGGATCCGGCTAAGAAGATCCGGAAGCCCTACACTATTACCAAGTGCAGAGAGAAGTGGACCGAGCCCGAGCACGACAAGTTCCTCGAAGCTCTTCAGCTTTTTGACCGTGATTGGAAAAAGATTGAGGCATTTGTTGGATCAAAGACAGTTATTCAGATACGTAGTCATGCACAGAAGTACTTTCTGAAGGTTCAGAAGAATGGAATAAATGAACATCTACCTCCCCCCCGGCCAAAAAGAAAAGCAGCACATCCATATCCTCACAAAGCCTCCAAAAATGCTCCAGTACTCTCACAAGGGACAGGGTCTTTCCATTCTTCAGCTGCTCTACGTGAAACCGGATATGTTCTTAGGCCTGATTCATCATCAATTCTTAGGAACCCAATCACTAGTGCTGCTGCATCTTCCTGGACTAACAGCAAACCTGCACAAACAGTTGGTTTGTCACATGTGGCAAAAGGTGATATGAGATCTGCAGGGCCAACAGTGCCTAATAATTGTTGCAGTAGCGCTGAGAGCACTCCAAGAGGAAGGACAACCGTTGAAGCATCTGAGCAAGGGAATCATGTCCATACATTGAGAGTTCTGCCTGACTTTGTTCAGGTATACAGATTCATTGGCAGTGTTTTTGACCCTAATTCTACTGGCCATTTACAGAAGCTAAAAAAGATGGATCCAATAGATGTTGAAACAGTGTTGCTGTTGATGAGAAACCTCTCCATCAATTTGACCAGCCCTGATTTTGAGGATCATAGAAAATTGCTTTCAACCTATGAGATCGACTCAGAGACAACTAGCCATGGTGTTGAGAGTAATAAAATCCCTCAGGATGACCAAACCAAGGACAGAGCTCAACTTGGGACCAAAGACAAAGATGAATGA 957 46.19 MALPGLGPFATTAAAAAAATTSSLEDPAKKIRKPYTITKCREKWTEPEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGINEHLPPPRPKRKAAHPYPHKASKNAPVLSQGTGSFHSSAALRETGYVLRPDSSSILRNPITSAAASSWTNSKPAQTVGLSHVAKGDMRSAGPTVPNNCCSSAESTPRGRTTVEASEQGNHVHTLRVLPDFVQVYRFIGSVFDPNSTGHLQKLKKMDPIDVETVLLLMRNLSINLTSPDFEDHRKLLSTYEIDSETTSHGVESNKIPQDDQTKDRAQLGTKDKDE* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18073808 18081913 - Vvi16g765 Vvi16g765 778414

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g765 318 PANTHER SWI/SNF COMPLEX-RELATED 7 299 - -
Vvi16g765 318 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 39 88 IPR006447 GO:0003677
Vvi16g765 318 Gene3D - 43 91 - -
Vvi16g765 318 MobiDBLite consensus disorder prediction 299 318 - -
Vvi16g765 318 CDD SANT 43 86 IPR001005 -
Vvi16g765 318 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 90 IPR017930 -
Vvi16g765 318 MobiDBLite consensus disorder prediction 287 318 - -
Vvi16g765 318 MobiDBLite consensus disorder prediction 94 125 - -
Vvi16g765 318 PANTHER PROTEIN REVEILLE 6 7 299 - -
Vvi16g765 318 Pfam Myb-like DNA-binding domain 41 86 IPR001005 -
Vvi16g765 318 MobiDBLite consensus disorder prediction 187 210 - -
Vvi16g765 318 MobiDBLite consensus disorder prediction 180 210 - -
Vvi16g765 318 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Vvi16g765 318 ProSiteProfiles SANT domain profile. 42 92 IPR017884 -
Vvi16g765 318 SMART sant 40 88 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g765 - - - vvi:100252586 622.468
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g841 Vvi16g765 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g765 Blo06g01137 . . . . Bpe07g00926 . . Cmo16g00104 Cmo18g01301 Cma02g01081 Cma15g01071 Car02g00823 Car15g00991 . Cpe05g00639 Cpe14g00081 . . . . . . . Cla01g00092 Cam01g0093 Cec01g0093 Cco01g0094 Clacu01g0091 Cmu01g0093 Cre09g2414 Cone1ag1192 Cone5ag0893 Cone14ag0055 . . Csa05g00104 Chy09g01391 . . . Bda06g00695 Bda15g00710 . Bpe12g00443 Bma08g00292 Bma12g01109 . Cmo02g01099 Cmo15g01128 Cma16g00097 Cma18g01270 Car16g00087 Car18g01182 Cpe09g00066 Cpe13g00273 Bhi12g00778 . . Lac11g0071 . . Lcy12g0058 Cla05g00915 Cam05g1001 Cec05g1005 Cco05g1002 Clacu05g0989 Cmu05g0945 . Lsi09g00078 Csa03g01749 Chy06g00978 Cme09g01935
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001829 2 1 2 1 2 2 5 2 2 2 2 2 5 2 2 4 2 3 5 1 2 2 2 2 2 1 2 2 2 1 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14157 PF00249 Myb_DNA-binding 2.30E-10 CL0123 Vvi TF