Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g773 ATGGCAGCGAGCGATGTGCCATGTTGTGAGACAATGTTCTGGATATATCTGGTTATATGCGTAGCTCTTGTGTCTTTTGCTGGTCTAATGTCAGGCCTCACTCTGGGACTCATGTCCCTCAGCCTTGTTGATCTAGAGGTCCTGGCCAAGGCTGGTCGGCCCCAAGATAGGAGGAATGCAGAGAAGATCCTGCCCATTGTTAAGAACCAGCACTTGCTCCTGTGTACCCTCCTCATAGGCAATTCTCTGGCAATGGAGGCCCTGCCCATTTTCCTTGATGCGCTTGTCCCAGCTTGGGGTGCTATATTGATATCAGTCACCCTCATACTTGCTTTTGGGGAGATCATCCCTCAAGCTGTCTGCTCCCAGTATGGTCTGAGCGTCGGTGCAAAACTGTCTGTTGTGGTTCGGTTACTTGTTTTAGTCCTCTTCCCTATATCTTACCCTATCAGTAAGCTCCTGGATTGGCTCCTTGGAAAGGGCCATTCTGCGCTGTTACGGCGAGCAGAGCTAAAGACCTTGGTGGATATGCATGGAAACGAGGCAGGGAGAGGTGGGGAGTTGACACATGATGAAACAACCATTATCTCTGGAGTTTTGGACATGACACAGAAGACAGCTAAAGATGCAATGACACCCATATCTGAAATATTTTCCCTTGACATAAACACTAGACTCGACGAGGATACAATGAGCCTAATACTTAACAGAGGGCATAGTCGAATACCCGTCTTCTCAGGAAGCCTGACAAATATAATCGGCCTTATTTTGGTGAAAAATCTGATCAAATGTCGTGCAGAAGATGAAACCCCAATCAGGAATCTTACTATTAGAAGAATCCCCAGGGTATATGATTGTTTACCACTGTATGATATACTAAATCAATTCCAGAAGGGTCACAGTCATATGGCTGTTGTTGTGAAGTGTAGGAAGGATGTCAAGACAAATACAGAAAATGCAAACACCAAACCCTGCACATTTGCGATAAATAACTCGAATTCGAGGCAAAGACAAGCCAAGAATAAAGGAGTTGACAATCAGTTTTGTCCAAGTGTACAGCTGAATATCTCTAGAAATGTGTCCTCTGAATCTAAAAATCCGACGTTAAAGAAAATGATGGAGCAAGGCAAAGGTGCGAGTCCACGGTTAAAAAAATGGGGAAGTGGAGATGGAAATGTTACAGATGAAGACTTGGAATCTCTTCCAAATTTGGATGAAGAGGTCATTGGTATCATAACAATGGAGGATGTCATGGAAGAACTGCTGCAGGAGGAGATATTGGATGAGACAGATGAGTACATCGATGTTCACAACAAGATCAAAATCAATATGCTTCCATCAAGAAGATCATCATCAAGATCTCCTGCAGTGGCACTGGCCTCTCACCTTCACTGGCGATCGCCAGTGGCATCTCCGCTTTCTTCATGTGGTCATACTCCAGTACTAGACTCACCAGTCTCCCCCTATGTTTATCCATCCTTTATAAGACCCACTCTCTCTGCTTCACCTGGGATTTCTATGCCAAATTCTCCAGCTGGTCTTGCAGGCCCTATTCGCAGCTCACCATCCCCACATCGGGTTTCAAGAAAATCATACGAGAAGATAAGGCAACCAGGTGGTTAA 1623 45.16 MAASDVPCCETMFWIYLVICVALVSFAGLMSGLTLGLMSLSLVDLEVLAKAGRPQDRRNAEKILPIVKNQHLLLCTLLIGNSLAMEALPIFLDALVPAWGAILISVTLILAFGEIIPQAVCSQYGLSVGAKLSVVVRLLVLVLFPISYPISKLLDWLLGKGHSALLRRAELKTLVDMHGNEAGRGGELTHDETTIISGVLDMTQKTAKDAMTPISEIFSLDINTRLDEDTMSLILNRGHSRIPVFSGSLTNIIGLILVKNLIKCRAEDETPIRNLTIRRIPRVYDCLPLYDILNQFQKGHSHMAVVVKCRKDVKTNTENANTKPCTFAINNSNSRQRQAKNKGVDNQFCPSVQLNISRNVSSESKNPTLKKMMEQGKGASPRLKKWGSGDGNVTDEDLESLPNLDEEVIGIITMEDVMEELLQEEILDETDEYIDVHNKIKINMLPSRRSSSRSPAVALASHLHWRSPVASPLSSCGHTPVLDSPVSPYVYPSFIRPTLSASPGISMPNSPAGLAGPIRSSPSPHRVSRKSYEKIRQPGG* 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18150125 18152952 - Vvi16g773 Vvi16g773 778422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g773 540 MobiDBLite consensus disorder prediction 505 540 - -
Vvi16g773 540 Gene3D - 360 429 IPR046342 -
Vvi16g773 540 Gene3D - 190 324 IPR046342 -
Vvi16g773 540 CDD CBS_pair_CorC_HlyC_assoc 206 307 IPR044751 -
Vvi16g773 540 ProSiteProfiles CNNM transmembrane domain profile. 9 192 IPR002550 -
Vvi16g773 540 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 1 534 IPR045095 GO:0010960
Vvi16g773 540 Pfam Cyclin M transmembrane N-terminal domain 19 191 IPR002550 -
Vvi16g773 540 MobiDBLite consensus disorder prediction 374 398 - -
Vvi16g773 540 PANTHER DOMAIN-CONTAINING PROTEIN, PUTATIVE, EXPRESSED-RELATED 1 534 - -
Vvi16g773 540 ProSiteProfiles CBS domain profile. 211 272 IPR000644 -
Vvi16g773 540 SUPERFAMILY CBS-domain pair 196 423 IPR046342 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g773 K16302 CNNM; metal transporter CNNM - vvi:100256110 1039.25
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g773 . . . . Bpe03g00157 . . . Cmo16g00103 . . . . . Sed13g0543 . Cpe14g00080 Bhi01g01589 Tan01g0786 . . . Mch10g0553 . . . . . . . . Cone1ag1195 . . Cone15ag0060 Lsi05g01188 . . . . Blo09g00058 . . . . . . . . . Cma16g00096 . Car16g00086 . . . . . . . . . . Cla05g00919 Cam05g1007 Cec05g1011 Cco05g1007 Clacu05g0995 Cmu05g0950 Cre05g1031 . Csa03g01752 Chy06g00981 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007021 1 9 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 37