Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g789 ATGATATGGAGAACAACTGTATCCAAGATACCCAGCAAAATTGAGTACTCACTCCTCAAAGACATTGTCTCATTCTGCAACTCAAGGTCCGTACGAGATGGGATTTGCATTCACAGTCCCATTATCAAAATGGGTTTTCAAGAAGACATGTTTCTTAGTAACAATCTGTTGTCTCTATATGGAAAGTGTTTTGGAGTGGCAGAAGCACGCCAATTGTTCGATGAAATGCCTTGTAGAGATGTTGCGTCTTGGACAATGCTCATGTCCGCTTATGGGAAAATTGGAAACCATGAAGAGGCTCTTGAACTGTTTGACTCAATGTTGATTTCTGGGGAATACCCAAATGAGTTTACGCTCTCGACTGCATTGCGGTCGTGTTCTGCTTTGAGGGAATTCAATCATGGGACTCGATTTCAGGCGCTTGTGACAAAGTCTGGGTTTGATTCAAATCCGGTTTTAGGCAGTGCTTTGATTGATTTTTACTCCAAATGTGGGTGTACTCAAGAAGCATACAGAGTATTTGAGTATATGAACAATGGGGATATTGTTTCTTGGACTATGATGGTGTCTTCCTTTGTTGAAGCAGGGAGTTGGAGTCAAGCTTTACAACTTTATCACCGAATGATCCAAACTGGGGTTGCTCCAAATGAGTTTACCTTTGTGAAGCTTTTGGCTGCATCCAGTTTTCTTGGTTTGAATTATGGGAAATTAGTGCACGCCCATTTGATGATGTGGCGGATTGAACTGAATTTGGTTTTGAAGACAGCCCTTGTAGATATGTACTGTAAATGCCAGAGCATAGAGGATGCTGTCAAGGTTTCAAAACTGACTCTAGAATATGATGTATTTTTGTGGACTGCCATCATCTCTGGTTTCACTCAAAGCTTGAAGTTCAGGGAGGCTATCACTGCATTTCATGAGATGGAGACCTCTGGAGTTGTACCGAATAATTTTACCTATTCTGGTATCCTGAATGCTTGTTCATCAATCCTGGCACTGGACTTGGGTAAACAGATTCACTCAAGGGTTGTCATGGCTGGATTGGAGAATGATGTCTCTGTTGGAAATTCACTTGTCGACATGTATATGAAATGTTCCAACATGATAGAAGATGCTGTGAGGGCATTTAGAGGGATAGCATCACCCAATGTCATCTCTTGGACCTCTCTGATTGCTGGTTTTTCTGAACATGGACTTGAGGAAGAATCGATTAAGGTGTTTGGAGCAATGCAAGGTGTAGGGGTGCGACCAAATTCCTTTACGCTCTCTACTATCCTTGGAGCTTGTGGAACAATAAAGTCTCTAACTCAAACAAGGAAGCTTCACGGGTATATAATTAAAAACAATGCGGATAATGATGTAGTCGTTGGCAATGCTCTTGTAGATGCTTATGCTGGATTGGGGATGGTGGATGATGCATGGCATGTGACCAGTATGATGAAGCATAGAGATGTCATCACATACACAAGCTTAGCCACAAGAATAAATCAGACAGGTAATCATGAAATGGCATTAAACATCATCACTCACATGAACAAGGATGATGTTAGAATGGATGGATTCAGTCTCGCAAGCTTCTTATCCGCAGCAGCAGGTATACCGATAATGGAAACTGGAAAGCAGCTTCACTGTTACTCTGTCAAGTCTGGCTTAGGCAGCTGGATTTCAGTCTCAAATGGCCTGGTTGACTTGTATGGGAAATGTGGATGCATACATGATGCACATAGATCTTTTCTGGAAATTACTGAGCCGGATGCCGTATCATGGAATGGGTTAATATTTGGATTGGCATCAAATGGGCATGTCTCATCTGCCTTATCTGCCTTTGAAGATATGAGGTTAGCTGGAGTTGAACCAGATCAGATTACATGCTTGTTAGTACTTTACGCTTGCAGTCATGGCGGCTTGGTTGATATGGGGTTGGACTATTTCCAATCTATGAGAGAAAAACATGGTATCAGACCACAACTAGATCACTATGTTTGTTTAGTTGATCTCCTTGGTCGAGCAGGCCGGCTAGAGGAGGCCATGAATGTAATAGAAACCATGCCTTTCAAACCAGATGCATTGATCTACAAAACACTATTGGGTGCCTGCAAACTACATGGGAACATACCTCTTGGGGAACATATGGCAAGACAAGGCCTCGAGCTCGACCCTTCTGATCCAGCATTCTATGTACTGCTTGCTAACCTGTATGATGATTCTGGCCGGTCTGAGCTAGGGGAGAAAACTCGGAGGATGATGAGGGAGAGAGGCGTGAGGAAGAATCCTGGTCAGAGCTGGATGGAGGAGAGGAACATGGTTCATCTCTTCACAGCAGGAGATACATCACATCCACAGATAGGTAAGATTCATGAAAAGATTGAATCACTGATAGCTCAGTTTAGGAATCAGGGAATTTGGTATCAAGAAAATAGAGCTTTGGCCCATCACAGTGAGAAGTTGGCTGTTGCATTCGGCCTTATCAGTACACCACCAAAAGCTCCAATACGCATTATTAAGAACATTCGCATTTGCAGAGATTGTCATGACTTTATAATGAACGTGACTAGGTTGGTTGATAGAGAGATCATTGTGAGGGATGGGAACCGCTTCCATTCCTTCAAGAAAGGTGAGTGCTCATGTAGAGGCTATTGGTAG 2643 42.79 MIWRTTVSKIPSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLFTAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALAHHSEKLAVAFGLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW* 881
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18393311 18395954 - Vvi16g789 Vvi16g789 778438

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g789 880 Pfam PPR repeat family 181 224 IPR002885 -
Vvi16g789 880 Pfam PPR repeat family 281 328 IPR002885 -
Vvi16g789 880 Pfam PPR repeat family 382 429 IPR002885 -
Vvi16g789 880 Pfam PPR repeat family 80 126 IPR002885 -
Vvi16g789 880 Pfam PPR repeat family 584 631 IPR002885 -
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 585 619 IPR002885 -
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Vvi16g789 880 Pfam DYW family of nucleic acid deaminases 806 880 IPR032867 GO:0008270
Vvi16g789 880 Pfam PPR repeat 155 177 IPR002885 -
Vvi16g789 880 Pfam PPR repeat 458 484 IPR002885 -
Vvi16g789 880 Pfam PPR repeat 660 683 IPR002885 -
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Vvi16g789 880 PANTHER - 130 491 - -
Vvi16g789 880 PANTHER - 420 813 - -
Vvi16g789 880 PANTHER - 16 421 - -
Vvi16g789 880 SUPERFAMILY TPR-like 50 738 IPR011990 GO:0005515
Vvi16g789 880 TIGRFAM PPR: pentatricopeptide repeat domain 83 116 IPR002885 -
Vvi16g789 880 TIGRFAM PPR: pentatricopeptide repeat domain 587 620 IPR002885 -
Vvi16g789 880 TIGRFAM PPR: pentatricopeptide repeat domain 284 316 IPR002885 -
Vvi16g789 880 TIGRFAM PPR: pentatricopeptide repeat domain 385 418 IPR002885 -
Vvi16g789 880 TIGRFAM PPR: pentatricopeptide repeat domain 183 217 IPR002885 -
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 233 331 IPR011990 GO:0005515
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 137 232 IPR011990 GO:0005515
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 4 136 IPR011990 GO:0005515
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 332 437 IPR011990 GO:0005515
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 438 532 IPR011990 GO:0005515
Vvi16g789 880 Pfam E motif 702 764 IPR046848 -
Vvi16g789 880 PANTHER - 16 421 - -
Vvi16g789 880 PANTHER - 420 813 - -
Vvi16g789 880 PANTHER - 130 491 - -
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 281 315 IPR002885 -
Vvi16g789 880 Gene3D Tetratricopeptide repeat domain 533 791 IPR011990 GO:0005515
Vvi16g789 880 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 80 114 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g789 - - - vvi:100254325 1758.42
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g789 . . . . . . . . . Cmo18g01310 . . . . . . . Bhi01g01420 . . . . Mch10g0115 . . . . . . . . . Cone5ag0899 . . Lsi05g01181 . . . . . . . . . . . . . . . Cma18g01279 . Car18g01193 . . . . . . . . . Cla05g00927 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014302 0 1 0 0 0 1 1 1 1 0 1 1 1 0 1 1 1 0 0 1 0 0 0 0 0 1 1 0 0 1 15