Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g790 ATGGCGTCCGATCTGGAGATCAGAGCCGGCAAGGCCTTCATCGACGACCACTTTGAACTCGCCGTTGACCTGTACACTCAGGCCATCGAAATAAACCCTAATCATGCCGAGCTCTATGTTGAACGATCTCAGGCCAACATCAAACTCAACAACTTCACTGAGGCTGTTGCTGATGCAAACAGAGCAATTGAGTTGGACCCATCAATGTCTAAAGCATTCTTGCGGAAAGGCACTGCATGTATGAAGCTTGAGGAATATCAAACTGCTAAGGCAGCCTTCGAAACAGGGGCTTCCTTGGCACCGGGAGATTCAAGATTCACTAATTTGATAAAAGAATGCGAAGAGTGCATTGCAGAGGAAACTGATGGCCTACCAAAGCAGTCAGTGGTACCAGCCCCTGAAGCTGTTGAATCTCCTGAAACTGTTGTAGCTGCAGAGGAAGTTCATCAGGTGCCAATGGTAACAGCAAGCAAACCAAAATACAGGCATGAATATTACCAGAAACCACAAGAAGTGGTTGTCACCATATTTGCAAAAGGCGTACCAGATGAAAATGTTGTTGTTGACTTTGGTGAACAAATACTGAGTGTCAGCATTGATGTTCCTGGTGATGTTGCATATCATTTTCAACCTCGCTTATTTGGAAAGATAATACCCGACAAGTGTAGATATGAAGTATTGTCAACCAAAATTGAAATCCGACTTGCAAAAGCTGAAGAAATTCATTGGACTTCTCTTGAATTCAGCAAGGAAAATACAGTTCCACAGAGGATAAATGTATCTACAAGTGTTGCATCTCAAAGGCCCACTTACCCGTCCTCTAAGACTAGAATGGTAGATTGGGATAAGCTGGAAGCACAAGTCAAGAAGGAGGAGAAAGAAGAAAAGCTGGATGGAGATGCAGCTCTGAACAAATTTTTCCGGGACATATATAAAGATGCAGACGAAGACACAAGAAGGGCCATGCAAAAATCTTTTGTGGAGTCAAATGGGACAGTGCTGTCGACAAACTGGAAGGAAGTTGGATCGAAGAAGGTTGAGGGAAGCCCTCCCGATGGCATGGAGATGAAGAAATGGGAGTACTGA 1086 44.2 MASDLEIRAGKAFIDDHFELAVDLYTQAIEINPNHAELYVERSQANIKLNNFTEAVADANRAIELDPSMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEECIAEETDGLPKQSVVPAPEAVESPETVVAAEEVHQVPMVTASKPKYRHEYYQKPQEVVVTIFAKGVPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVLSTKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQVKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18398944 18408373 + Vvi16g790 Vvi16g790 778439

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g790 361 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Vvi16g790 361 Gene3D - 154 265 IPR008978 -
Vvi16g790 361 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 361 - -
Vvi16g790 361 SMART tpr_5 36 69 IPR019734 GO:0005515
Vvi16g790 361 SMART tpr_5 70 103 IPR019734 GO:0005515
Vvi16g790 361 SMART tpr_5 2 35 IPR019734 GO:0005515
Vvi16g790 361 CDD p23_CS_SGT1_like 164 247 - -
Vvi16g790 361 ProSiteProfiles CS domain profile. 158 247 IPR007052 -
Vvi16g790 361 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Vvi16g790 361 Pfam Tetratricopeptide repeat 71 102 IPR019734 GO:0005515
Vvi16g790 361 Gene3D Tetratricopeptide repeat domain 1 128 IPR011990 GO:0005515
Vvi16g790 361 ProSiteProfiles SGS domain profile. 270 361 IPR007699 -
Vvi16g790 361 SUPERFAMILY TPR-like 7 114 IPR011990 GO:0005515
Vvi16g790 361 Pfam CS domain 162 237 IPR007052 -
Vvi16g790 361 SUPERFAMILY HSP20-like chaperones 157 254 IPR008978 -
Vvi16g790 361 PANTHER PROTEIN SGT1 HOMOLOG 1 361 IPR044563 GO:0051087
Vvi16g790 361 Pfam SGS domain 280 359 IPR007699 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g790 K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1 - vvi:100244083 716.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g48 Vvi16g790 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g790 . . Bda05g00098 Bda07g01908 Bpe03g00160 . Bma10g01265 Bma14g02037 Cmo16g00095 Cmo18g01311 . . . . Sed07g0976 . Cpe14g00075 Bhi01g01421 Tan01g0179 Cmetu06g2016 . Hepe07g0111 Mch10g0114 . . . . . . . . Cone1ag1200 Cone5ag0900 . . Lsi05g01180 . . . Blo07g00360 Blo09g00053 . . . . . . . . . Cma16g00091 Cma18g01280 . Car18g01194 Cpe09g00058 . . . . . . . . Cla05g00928 Cam05g1015 Cec05g1019 Cco05g1015 Clacu05g1004 Cmu05g0957 Cre05g1038 . Csa03g01760 Chy06g00988 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005199 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 2 2 1 40