Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g791 ATGGAGTTGTACATGAGAGGTTTGGTGGTTCTCTCGCTCTATTTTCTTTTCACTCTAGCCACAAAGTTCGGTTGTTGTGATGGACATGGTTCGAAGGCTCTTTGCAGAGAAGAAGAAAGAGAAGCTCTTTTGAGCTTCAAAAGAGGCATTCATGATCCTTCAAACAGACTCTCTTCTTGGGCCAGTGAAGAGTGTTGTAATTGGGAAGGAGTTTGTTGTCACAACACAACAGGACATGTTCTCAAGCTCAACCTCCGATGGGATCTTTATCAATATCATGGTTCTCTGGGTGGTGAGATAAGTAGTTCTTTGTTGGACTTGAAGCATCTTCAATACTTGGACCTGAGTTGCAATGACTTTGGGAGCCTTAATATTCCAAAATTCCTTGGTTCCTTATCCAATTTAAGATATCTTAACCTCTCTACTGCAAGTTTTGGTGGTGTTATTCCTCATCAACTTGGAAATTTATCCAAGTTGCATTATCTCGACATTGGGAATTCTTATTACGACCATAGAAATTCTTTGAATGCTGAGGATCTTGAATGGATTTCTATCATCCTTGACCTTTCAATTAATTATTTTATGTCTTCATCATTTGATTGGTTTGCGAATCTTAATTCTCTTGTTACTCTTAATCTAGCATCCAGTTATATTCAAGGTCCAATTCCATCAGGTCTTCGTAACATGACTTCTCTTAGATTCCTAGATCTTTCCTATAACAATTTTGCTTCTTCTATTCCTGATTGGTTATATCATATAACTAGCCTTGAACACCTCGATCTTGGATCCCTTGACATTGTATCTAACAAGTTTCAAGGTAAGCTTCCAAATGATATTGGAAATCTCACCTCTATCACATATCTTGACCTATCATACAATGCTCTTGAAGGAGAAATACTAAGATCTCTAGGAAATCTTTGTACTTTCCAACTTTCGAATTTGTCATATGATAGGCCTCAAAAAGGTTATTTGCCCAGTGAAATTGGCCAATTCAAAAGTTTATCCTACCTTTCCATTGATAGAAACTTGTTTTCTGGTCAGATTCCTATCTCATTAGGAGGAATTTCATCCTTAAGTTATCTAAACATTAGGGAAAATTTCTTCAAGGGTATTATGTCTGAAAAGCACCTTGGCAATCTAACAAGTTTAGAAGAATTGGATGCATCTTCAAACTTGTTAACTTTGCAAGTCAGCTCCAACTGGACTCCTCCTTTTCAACTCACATACTTATACTTGGGTTCTTGCCTTCTAGGGCCTCAATTTCCTGCATGGCTTCAAACACAGGAGTATTTGGAAGATCTAAACATGTCCTATGCAGGAATCTCCAGTGTCATCCCAGCTTGGTTTTGGACTCGATCACTTAGTACTGTAGATCTATCTCACAACCAAATCATTGGTAGTATTCCAAGTTTACATTTTTCATCAATCAATCTTGGCTCAAACAATTTTACTGATCCACTGCCCCAAATCTCTTCTGATGTAGAAAGACTAGACCTCTCCAATAATTTATTCTGTGGATCTCTTTCACCCATGTTGTGTCGGAGAACTGATAAAGAAGTAAATTTATTGGAGTCTCTAGACATCTCAGGAAATCTTCTGTCAGGAGAACTTCCCAATTGTTGGATGTATTGGAGAGAATTGACGATGTTAAAATTGGGAAATAATAATCTGACGGGACATATACCTAGCTCCATGGGTTCTCTAATTTGGCTCGTCATCCTTGACCTTTCAAATAATTATTTTATTTCTATATCATTTGATCGGTTTGCTAATCTTAATTCTCTTGTTACTCTTAATCTAGCATTTAACAATATTCAGGGCCCAATTCCATCAAGTCTTCGTAACATGACTTCTCTTAGATTCCTAGATCTTTCTTATAACTACTTCACTTCTCCTATTCCTGATTGGTTATATCATATAACTAGCCTTGAACACCTCGATCTTGGATCCCTCAATACTGAGTCTAACAATTTTCATGGTATCGTTCCAAATGATATTGGAAATCTCACTTCTATCACATATCTTGACCTATCATACAATGCTCTTGAAGTGGAAATTTTTAGATCTCTAGGAAATCTTTGTAGTTTCCAACTTTTGAATTTTTTGTCCTCTCTTTCTATTGATAGAAACTCGTTTTCTGGTCATATTCCTATCTCATTAGGAGGAATTTCATCCTTGCGTTATCTACGAATTAGGGAAAACTTCTTCGAGGGAATCTCCGGTGTCATCCCAGCTTGGTTTTGGACTCGATTCCTTAGGACTGTAGATCTATCTCACAACCAAATCATTGGTAGTATTCCAAGTTTACATTCATCCTATATCTATCTCGGCTCAAACAATTTCACTGATCCACTGCCCCCAATCCCTTCTGATGTAGCACAACTAGACCTCTCCAATAATTTATTCCGTGGATCTCTTTCACCTATGTTGTGTCGGAGAACTAAAAAGGTAAATTTATTGGAGTATCTAGACATCTCAGGAAATCTTCTGTCAGGAGAACTTCCCAATTGGGATGGTGAGATTACATATACACCGGGTCTAACGGTTCTTGTCCTTCATTCAAATAAGTTCACTGGAAGTATTCCTCTTGAACTCTGCCACCTTGATTCCCTTCAAATCCTGGACTTGGGAAACAACAATCTCTCGGGAACCATTCCTAGATGCTTTGGTAATTTCAGCAGCATGACCAAACAATCAAATTCAAGTTCCCCCTTTCGTTTTCATAATGAAGATTTTATTTATGCGGGATCAATTGACACAGCAATACTGGTTATGAAAGGAGTAGAGTACGAGTACGACAATACACTTGGCCTCCTAGCTGGCATGGACCTCTCAAGCAATAAGTTATCTGGTGAGATCCCAGAAGAACTCACAGATCTCCATGGGTTGATATGTTAG 2898 37.96 MELYMRGLVVLSLYFLFTLATKFGCCDGHGSKALCREEEREALLSFKRGIHDPSNRLSSWASEECCNWEGVCCHNTTGHVLKLNLRWDLYQYHGSLGGEISSSLLDLKHLQYLDLSCNDFGSLNIPKFLGSLSNLRYLNLSTASFGGVIPHQLGNLSKLHYLDIGNSYYDHRNSLNAEDLEWISIILDLSINYFMSSSFDWFANLNSLVTLNLASSYIQGPIPSGLRNMTSLRFLDLSYNNFASSIPDWLYHITSLEHLDLGSLDIVSNKFQGKLPNDIGNLTSITYLDLSYNALEGEILRSLGNLCTFQLSNLSYDRPQKGYLPSEIGQFKSLSYLSIDRNLFSGQIPISLGGISSLSYLNIRENFFKGIMSEKHLGNLTSLEELDASSNLLTLQVSSNWTPPFQLTYLYLGSCLLGPQFPAWLQTQEYLEDLNMSYAGISSVIPAWFWTRSLSTVDLSHNQIIGSIPSLHFSSINLGSNNFTDPLPQISSDVERLDLSNNLFCGSLSPMLCRRTDKEVNLLESLDISGNLLSGELPNCWMYWRELTMLKLGNNNLTGHIPSSMGSLIWLVILDLSNNYFISISFDRFANLNSLVTLNLAFNNIQGPIPSSLRNMTSLRFLDLSYNYFTSPIPDWLYHITSLEHLDLGSLNTESNNFHGIVPNDIGNLTSITYLDLSYNALEVEIFRSLGNLCSFQLLNFLSSLSIDRNSFSGHIPISLGGISSLRYLRIRENFFEGISGVIPAWFWTRFLRTVDLSHNQIIGSIPSLHSSYIYLGSNNFTDPLPPIPSDVAQLDLSNNLFRGSLSPMLCRRTKKVNLLEYLDISGNLLSGELPNWDGEITYTPGLTVLVLHSNKFTGSIPLELCHLDSLQILDLGNNNLSGTIPRCFGNFSSMTKQSNSSSPFRFHNEDFIYAGSIDTAILVMKGVEYEYDNTLGLLAGMDLSSNKLSGEIPEELTDLHGLIC* 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18445145 18457691 - Vvi16g791 Vvi16g791 778440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g791 965 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Vvi16g791 965 ProSiteProfiles Leucine-rich repeat profile. 453 475 IPR001611 GO:0005515
Vvi16g791 965 Pfam Leucine Rich repeat 108 121 IPR001611 GO:0005515
Vvi16g791 965 Pfam Leucine Rich repeat 282 303 IPR001611 GO:0005515
Vvi16g791 965 SMART LRR_typ_2 107 131 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 568 591 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 669 689 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 229 253 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 592 615 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 132 156 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 616 640 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 868 891 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 282 306 IPR003591 -
Vvi16g791 965 SMART LRR_typ_2 936 960 IPR003591 -
Vvi16g791 965 Pfam Leucine Rich Repeat 870 892 IPR001611 GO:0005515
Vvi16g791 965 SUPERFAMILY RNI-like 186 470 - -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 320 542 IPR032675 -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 700 965 IPR032675 -
Vvi16g791 965 SUPERFAMILY L domain-like 34 267 - -
Vvi16g791 965 Pfam Leucine rich repeat 187 242 IPR001611 GO:0005515
Vvi16g791 965 Pfam Leucine rich repeat 571 628 IPR001611 GO:0005515
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 545 651 IPR032675 -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 35 184 IPR032675 -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 185 264 IPR032675 -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 652 699 IPR032675 -
Vvi16g791 965 SUPERFAMILY L domain-like 457 901 - -
Vvi16g791 965 Gene3D Ribonuclease Inhibitor 265 319 IPR032675 -
Vvi16g791 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 739 962 - -
Vvi16g791 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 451 747 - -
Vvi16g791 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 470 - -
Vvi16g791 965 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 264 648 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g791 - - - vvi:100262982 879.396
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001559 0 2 0 0 0 1 1 1 1 0 1 1 1 0 2 1 1 0 1 1 0 5 1 12 10 3 2 4 2 6 60