Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g793 ATGAATAAGTTTCATTCTTTATCTGTGCTACGCTTGTCTTATTGTGAGCTTCATACTATTGACCCTCTCCCGCATGTCAATTTTTCATCTTTAGTCATCCTTGACCTTTCAATTAATTATTTTATGTCTTCATCATTTGATTGGTTTGCGAATCTTAATTCTCTTGTTACTCTTAATCTAGCATCTAGTTATATTCAAGGTCCAATTCCATCAGGTCTTCGTAACATGACTTCTCTTAGATTCCTAGATCTTTCCTATAACAATTTTGCTTCTTCTATTCCTGATTGGTTATATCATATAACTAGCCTTGAACACCTCGATCTTGGATCCCTTGACATTGTATCTAACAAGTTTCAAGGTAAGCTTCCAAATGATATTGGAAATCTCACTTCTATCACATATCTTGACCTATCATACAATGCTCTTGAAGGAGACGTGCTGAGATCTCTTGGAAATCTTTGTACTTTCCAACTTTCGAATTTGTCATATGATAGGCCTAGAAAAAGTCTAGAGTTTTTAAGCTTGAGGGGAAATAAACTTTCAGGTTCTTTTCCGGATACTCTTGGGGAATGTAAAAGTTTAGAGGGTTTAGACTTGGGAATGAATCAGCTTTCAGGTCATTTGCCCAATGAACTTGGTCAATTAGAAAGCTTGTCCTCTCTTTCTATTGATGGAAACTCGTTTTCTGGTCAGATTCCTGTCTCATTAGGAGGAATTTCATCCTTGCAAAGACTAGACCTCTCCAATAATTTATTCTGTGGATCTCTTTCACCCATGTTGTGTCGGAGAACTGATAAAGAAGTAAATTTATTGGAGTCTCTAGACATCTCAGGAAATCTTCTGTCAGGAGAACTTCCCAATTGTTGGATGTATTGGAGAGAATTGACGATGTTAAAATTGGGAAATAATAATCTGACGGGACATATACCTAGCTCCATGGGTTCTCTAATTTGGCTCGATTGCATATACACCGGGTCTAATGGTTCTTGTCCTTCATTCAAATAA 1005 36.72 MNKFHSLSVLRLSYCELHTIDPLPHVNFSSLVILDLSINYFMSSSFDWFANLNSLVTLNLASSYIQGPIPSGLRNMTSLRFLDLSYNNFASSIPDWLYHITSLEHLDLGSLDIVSNKFQGKLPNDIGNLTSITYLDLSYNALEGDVLRSLGNLCTFQLSNLSYDRPRKSLEFLSLRGNKLSGSFPDTLGECKSLEGLDLGMNQLSGHLPNELGQLESLSSLSIDGNSFSGQIPVSLGGISSLQRLDLSNNLFCGSLSPMLCRRTDKEVNLLESLDISGNLLSGELPNCWMYWRELTMLKLGNNNLTGHIPSSMGSLIWLDCIYTGSNGSCPSFK* 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18462908 18465345 - Vvi16g793 Vvi16g793 778442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g793 334 Gene3D Ribonuclease Inhibitor 113 332 IPR032675 -
Vvi16g793 334 Pfam Leucine rich repeat 169 227 IPR001611 GO:0005515
Vvi16g793 334 Pfam Leucine rich repeat 54 109 IPR001611 GO:0005515
Vvi16g793 334 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 111 262 - -
Vvi16g793 334 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 170 321 - -
Vvi16g793 334 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 4 158 - -
Vvi16g793 334 Pfam Leucine Rich Repeat 271 288 IPR001611 GO:0005515
Vvi16g793 334 SUPERFAMILY RNI-like 3 323 - -
Vvi16g793 334 Gene3D Ribonuclease Inhibitor 1 112 IPR032675 -
Vvi16g793 334 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 4 158 - -
Vvi16g793 334 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 170 321 - -
Vvi16g793 334 PANTHER RECEPTOR-LIKE KINASE FAMILY PROTEIN, PUTATIVE-RELATED 111 262 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g793 - - - vvi:100262982 424.091
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g793 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .