Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g809 ATGGAACAGAAGCACATATTGTTGTCTGCCTTGATCGTTGGGGTGGGCGTCTCGGTTGGCCTTGGTTTGGCTTCTGGACAGACAGTGTGTCGATGGACGGGGCTGAAACTCTGGCCGGACGCAATTACAGAAGAGCAGATTGAGCATGAGCTACGGCGACAGGTCATGGATGGAAGGGAAAGCAAGATCACCTTCGACAAGTTTCCTTATTTCCTCAGTAAGCAGACAAGAGTGTTACTGACAAGTGCTGCACATTTCCATCTAAGGCAGTCTGACTTTTCTAAGCACACCCGAAACCTTACGCCTGCAAGCAGAGCTATTTTGCTCTCAGGACCTGCTGAACTGTACCAGCAAACACTCGCCAAAGCTCTAGCTCATTTCTTCCAAGCAAAGTTGCTGCTGTTGGACCTTAATGACTTTTCTCTGAAGATGCAGAGCAAATATGGAAGCCCCAAAAGAGAATCTTCTTCCAAGAAGTCCATCTCAGAGGTGACACTGGGGCCGATGTCTGGTTTTCTTGGCTCTTTCTCAATCCTTCTCCAGAGTGAAGAAGAAGAAACCAAAGGCACATTGTCTAGGCAAAGCAGTGGTGCCCATATTAAATCAAGATGTATGAATCCTCCAAAGCATGGTAGCAATGCTTCTACTCCATCTAATACAAAGAACACTGTTGCTTCTCAACGTGTTACTACAAGTTCAGCTCATTTCAAGCGCACAAGCAACTGGGCTTTTGATGAGAAGCAACTTTTGCAGTCACTTTACAAGGTCTTGGATTCAGTATCAGAAACATGTCCCATTATTTTATACCTCAGGGATGTCGAGAAGCTTCTTCTCCAATCAGAAAGATTATACAAATTGTTCCAGAAAATGTTGGGTAGATTATCAGGATCAGTTCTGATACTTGGTTCCCGCATGCTAGACCCTGATGACGAGGACGAAGAAATGGATGAAAGGGTGAGTCTCTTATTCCCTTACAATATTGAAATCAAGGAGCCCGAGGATGAGACTTGTCTTGATATCTGGGAAGCCCAACTGGAAAAGGAGAGAGAGATGATCCAGTTTCAGGAAAACAAAAATCATATTGCTGAGGTGCTTGCAGCAAATGATATTGGCTGTGATAATTTGGGTTCAATCTGCCATGCAGACTCCATGATTCTAAGTGACCACATAGAAGAGATTGTAATATCTGCACTATCTTATCATTTGATGCATAACAAAAATCCAGAATACCGAAATGGAAAGCTTGTCATATCTTCCAAGAGTTTGTCCCATGGATTGAGTATATTCAAGGAAGACACACGAAAGACAAATGCTGAATCTTCTAAGTTGGTTCCACCTTACAATGAATTTGAGAGGCGTATAAGGCCAGAGGTTATCCCAGCAAATCAGATAGGAGTGGCATTTGAGGACATTGGTGCCTTGGATGACATTAAAGAATCTCTTCAGGAGCTGGTTATGCTCCCTCTTCAGAGGCCAGACCTCTTCAAGGGTGGGCTTCTGAAGCCTTGCAGGGGGATATTACTCTTCGGACCTCCTGGTAATGGAAAAACTATGCTGGCAAAGGCCATTGCCAATGAAGCTGGAGCACGCTTCATCAATGTCTCAATGTCCACCGTCACTTCAAAATGGTTTGGTGAAGTTGAGAAGAATGTTCGAGCTCTGTTCACACTCGCAGCAAAGATCTCCCCAACTATTATTTTTGTGGATGAGGCTGACAGTTTGCTTGGGCAGCGGACCGAAGTTGGAGAGCATTATGCTATGCGACAGATTAAGAATGAGTTCATGACACATTGGGATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGAGCACAGAATTATGGTTGGTCTACCATCTGTGGAGAGCAGGGAGATGATATTGAAGACTCTCTTGGCAAAAGAAAAAGCAGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGAATTTGTGCATGACAGCAGCTTATCGTCCTGTAAAGGAGCTACTACAACAAGAGAGATTGAAGGAGGATAAAAAAAAGAAGCAGAAAGCTGATGAAGGGAAAAGCTCAGAGGATGCTTCGGATACCAAAGAAGAAGCCAAAGGGGAAAAGGTAATTGTTCTGAGACCCTTAAACATGGAAGACATGAGGCAGGCAAAGAATCAGGTTGCTGCTAGTTTTGCTTCTGATGAAGCAGTAATGAACAAGCTGAAGCAGTGGAATGAATTGTATGGAGATGGCGGTTCAAGGAGGAAGAAACAACTGACCTACTTCCTATAG 2349 44.19 MEQKHILLSALIVGVGVSVGLGLASGQTVCRWTGLKLWPDAITEEQIEHELRRQVMDGRESKITFDKFPYFLSKQTRVLLTSAAHFHLRQSDFSKHTRNLTPASRAILLSGPAELYQQTLAKALAHFFQAKLLLLDLNDFSLKMQSKYGSPKRESSSKKSISEVTLGPMSGFLGSFSILLQSEEEETKGTLSRQSSGAHIKSRCMNPPKHGSNASTPSNTKNTVASQRVTTSSAHFKRTSNWAFDEKQLLQSLYKVLDSVSETCPIILYLRDVEKLLLQSERLYKLFQKMLGRLSGSVLILGSRMLDPDDEDEEMDERVSLLFPYNIEIKEPEDETCLDIWEAQLEKEREMIQFQENKNHIAEVLAANDIGCDNLGSICHADSMILSDHIEEIVISALSYHLMHNKNPEYRNGKLVISSKSLSHGLSIFKEDTRKTNAESSKLVPPYNEFERRIRPEVIPANQIGVAFEDIGALDDIKESLQELVMLPLQRPDLFKGGLLKPCRGILLFGPPGNGKTMLAKAIANEAGARFINVSMSTVTSKWFGEVEKNVRALFTLAAKISPTIIFVDEADSLLGQRTEVGEHYAMRQIKNEFMTHWDGLLTKAGERVLVLAATNRPFDLDEAIIRRFEHRIMVGLPSVESREMILKTLLAKEKAEDLDFKELATMTEGYTGSDLKNLCMTAAYRPVKELLQQERLKEDKKKKQKADEGKSSEDASDTKEEAKGEKVIVLRPLNMEDMRQAKNQVAASFASDEAVMNKLKQWNELYGDGGSRRKKQLTYFL* 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18748877 18753944 - Vvi16g809 Vvi16g809 778458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g809 782 ProSitePatterns AAA-protein family signature. 609 628 IPR003960 GO:0005524|GO:0016887
Vvi16g809 782 Pfam AAA+ lid domain 658 694 IPR041569 -
Vvi16g809 782 Coils Coil 338 358 - -
Vvi16g809 782 MobiDBLite consensus disorder prediction 187 201 - -
Vvi16g809 782 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 467 697 IPR027417 -
Vvi16g809 782 MobiDBLite consensus disorder prediction 208 232 - -
Vvi16g809 782 Gene3D - 638 711 - -
Vvi16g809 782 Gene3D - 465 637 IPR027417 -
Vvi16g809 782 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 437 - -
Vvi16g809 782 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 440 782 - -
Vvi16g809 782 MobiDBLite consensus disorder prediction 187 232 - -
Vvi16g809 782 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 437 - -
Vvi16g809 782 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 440 782 - -
Vvi16g809 782 SMART AAA_5 502 639 IPR003593 -
Vvi16g809 782 MobiDBLite consensus disorder prediction 695 724 - -
Vvi16g809 782 CDD AAA 504 637 - -
Vvi16g809 782 Pfam ATPase family associated with various cellular activities (AAA) 506 636 IPR003959 GO:0005524|GO:0016887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g809 - - - vvi:100252698 1454.5
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g809 Blo06g01180 Blo15g00212 . . . . . . . . Cma02g01088 . Car02g00831 . . . . . . . . . . . . . . . . . . . Cone5ag0903 . . . . . . . . Bda06g00733 . . Bpe12g00487 . . . Cmo02g01109 . . . . . . . Bhi12g00765 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75