Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g810 ATGATTAGCACTTGGAGCTGTAGTTTGAGTTTAGGTATACTTCTCAGTCTCTGCCAAAAATTTCTCTGGATTTTCAAACATATTCTGCCATCAACACTGCTCATAGTATTACCCTGTTGGGGAAGGCCTGAAGTAATGGAACAGAAGCAAATCTTGCTGTCTGCTCTGAGCCTCGGGATCGGTGTTTCGGTTGGCCTTACTTTGGCCTCTGGACAGACAATGAGCCGATGGACCGGGCTGCTGAACTGCTCGGCGGGCGCAATTACAGAAGCGCAGCTTGAGCATGAGCTACGGGGACAGGTTGTGGATGGAAAGGAAAGCAAGATCACATTTGAGGAGTTTCCTTATATCCTCAGTAAGCAGACACGAGGATTACTGACAAGTGCTGCACATGTTCATCTAAGGCTCTCTGACTTTTCTAAGCACACCCAGAAACTTATGCCTGCAGGCAGGGCTATTTTGCTCTCAGGACCTGCTGAACTTTATCAGCGAGCACTCGCCAAAGCTTTAGCACAATTCTTTGAAGCAAAGTTGCTGCTGTTGGATGTTAATGACTTTTCTCTAAAGATGCAGAGCAAATATGGTTGTCCCAGAAAAGAATATTCTTCCAAGAAGTCCATCCCAGAGACGACATTGAAGCAAATCTCTGGGTTTCTTGGCTCTTTCTCAATCCTTCCCCAAAGAGAAGAAACCAAAGACACATTATCTAGGCAAAGCACTGGTGCCAATATTAAGTCAAAAAGTATGGATCCTCCACAACATTGTGGTAGTGCTTCTACTTCATCTAATGCGAGCACCATTCCTCCCAATATGTTAGTCTTACTGCTGCTCATTTCTTTTGTAGCTCATATCAAGTGCACAAGCAGCTGGGCTTTTGATGAGAAACATCTTTTGCAGTCGCTTTACAAGGTCTTGGTTTCAGTATCGGAAACATGTTCCATGATTTTATACATCAGGGATGTTGACAAGCTTCTTCTGCAATCAGATAGATTTTACAAATTGTTCCGGAAAATGTTGGACAAATTATCGGGATCAGTTCTGATACTTGGTTCCCGCATGTTAGACCCTGATGATGAGGATAATGAAATGGATGAAAGGGTGAGTCTTTTATTCCCTTGCAATATTGAAATCGAGAAACCTGAGGATGAGACTCATCTTGATAGATGGGAAGCCCAACTGAAAGAGGAGACAAAGGTGATCCAGTTTCAGGACAACAAAAATTATATGGCTAAGGTGCTTGCAGCAAATGATCTTGACTGTGATGATTTGGGTTCAATCTGCTATGCAGACCCTGAAATTCTAAGTGATTACACAGAAGAGATTGTAATATCTGCAATATCTTATCATTTGTTGAATAACAAAGATCCAGAATACCGAAACGGAAAGCTTGTCATATCTTCTAAGAGTTTGTCTCATGGATTGAGTTTATTCCAGGAAGACGCACCAAATGCTGAATCTAAGGTATTTCCACGTTGCAATGAATTTGAGAGTCGTATAAGGCCAGAGGTTATCCCACCAAATCGGATAGGAGTGACATTTGATGACATCGGTGCCTTGGATGACATTAAAGAATCACTGGAGGAGTTGGTCATGTTCCCTCTTCAAAGACCAGAGATCTTCAAGGGTGGGCTTCTTAAGCCTTGCAGGGGGATACTACTCTTCGGGCCTCCTGGTACTGGAAAAACGATGCTGGCAAAGGCTATGGCCAATGAAGCTGGAGCAAGCTTCATCAATGTCTCAATGTCCACCATCACTTCAAAATGGTTTGGTGAAGATGAGAAGAATGTTCGAGCTCTGTTCACACTTGCGGCAAAGATCTCCCCAACTATTATTTTTGTGGATGAGGTTGATAGCATGCTTGGGCAGCGACTTGAATTTGGAGAGGATTGTAGTATGCGAAAGATTAAGAATGAATTCATGACACATTGGGATGGACTACTGACAAAAGCTGGTGAACGAGTCCTCGTTCTTGCTGCAACCAACAGGCCATTTGACCTTGATGAGGCGATTATCAGGCGGTTTGACCACAGAATTATGGTTGGTCTACCATCTGTGGAGAGCAGAGAGATGATCCTGAAGACTCTCTTGGCTAAAGAACAAGCCGAGGATCTTGACTTTAAGGAGCTTGCAACCATGACAGAAGGTTATACTGGAAGTGATCTTAAGAACTTGTGCATGGCAGCAGCTTATCGTCCTGTAAGGGAGCTAGCACAACAAGAGAGAATGAAGAAGGATAAAAAAAAGAAGCAGAAAGCTGATGAAGGAAAAAGCTCAGAGGATGCTTCGGATACCAGAGAAGAAGCCAAAGGGGAAAGGGTAATTGTTCTGAGACCCTTAAACATGGAAGACATGAGGCAGGCAAAGAATCAGGTTGCTGCTAGTTTTGCTTCTGATGGAGCGGCAATGAACAAGCTGAAGCAGTGGAATGAATTGTATGGAGAAGGCGGCTCAAGGAAGAAGGAACAGCTGACCTACTTTCTATAG 2484 43.56 MISTWSCSLSLGILLSLCQKFLWIFKHILPSTLLIVLPCWGRPEVMEQKQILLSALSLGIGVSVGLTLASGQTMSRWTGLLNCSAGAITEAQLEHELRGQVVDGKESKITFEEFPYILSKQTRGLLTSAAHVHLRLSDFSKHTQKLMPAGRAILLSGPAELYQRALAKALAQFFEAKLLLLDVNDFSLKMQSKYGCPRKEYSSKKSIPETTLKQISGFLGSFSILPQREETKDTLSRQSTGANIKSKSMDPPQHCGSASTSSNASTIPPNMLVLLLLISFVAHIKCTSSWAFDEKHLLQSLYKVLVSVSETCSMILYIRDVDKLLLQSDRFYKLFRKMLDKLSGSVLILGSRMLDPDDEDNEMDERVSLLFPCNIEIEKPEDETHLDRWEAQLKEETKVIQFQDNKNYMAKVLAANDLDCDDLGSICYADPEILSDYTEEIVISAISYHLLNNKDPEYRNGKLVISSKSLSHGLSLFQEDAPNAESKVFPRCNEFESRIRPEVIPPNRIGVTFDDIGALDDIKESLEELVMFPLQRPEIFKGGLLKPCRGILLFGPPGTGKTMLAKAMANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKISPTIIFVDEVDSMLGQRLEFGEDCSMRKIKNEFMTHWDGLLTKAGERVLVLAATNRPFDLDEAIIRRFDHRIMVGLPSVESREMILKTLLAKEQAEDLDFKELATMTEGYTGSDLKNLCMAAAYRPVRELAQQERMKKDKKKKQKADEGKSSEDASDTREEAKGERVIVLRPLNMEDMRQAKNQVAASFASDGAAMNKLKQWNELYGEGGSRKKEQLTYFL* 828
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18755872 18768116 - Vvi16g810 Vvi16g810 778459

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g810 827 Pfam AAA+ lid domain 703 743 IPR041569 -
Vvi16g810 827 Gene3D - 683 791 - -
Vvi16g810 827 Coils Coil 386 406 - -
Vvi16g810 827 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 739 IPR027417 -
Vvi16g810 827 MobiDBLite consensus disorder prediction 229 264 - -
Vvi16g810 827 Pfam ATPase family associated with various cellular activities (AAA) 551 681 IPR003959 GO:0005524|GO:0016887
Vvi16g810 827 CDD AAA 549 682 - -
Vvi16g810 827 ProSitePatterns AAA-protein family signature. 654 673 IPR003960 GO:0005524|GO:0016887
Vvi16g810 827 SMART AAA_5 547 684 IPR003593 -
Vvi16g810 827 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 46 481 - -
Vvi16g810 827 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 489 827 - -
Vvi16g810 827 MobiDBLite consensus disorder prediction 736 771 - -
Vvi16g810 827 Gene3D - 511 795 IPR027417 -
Vvi16g810 827 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 46 481 - -
Vvi16g810 827 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 489 827 - -
Vvi16g810 827 MobiDBLite consensus disorder prediction 236 264 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g810 - - - vvi:100247304 1405.96
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g63 Vvi16g810 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g810 . Blo15g00108 . . . . . . . . . Cma15g01059 . Car15g00982 . Cpe05g00632 . . . . . . . . Cla01g00082 Cam01g0082 Cec01g0083 Cco01g0083 Clacu01g0082 Cmu01g0084 Cre09g2425 . . . Cone15ag0049 . Csa05g00095 Chy09g01399 . . . . . . . . . . . Cmo15g01117 . . . . . Cpe13g00283 Bhi12g00764 . . . . . Lcy12g0068 . . . . . . . Lsi09g00068 . . Cme09g01945
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001190 2 3 2 2 2 2 2 2 2 2 2 2 3 2 2 3 2 5 4 2 3 2 2 2 2 2 2 5 3 4 75