Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g814 ATGGCCTCTTCTTCTTCTCCTACCAGGGTTTTGTTCTTCTTGGCTTTGGCCGGGCTCGTCGGTGTTGCGACTGGTAGCGTTGGGTTGGGCGCGAGGTTGGTGGCTAAGGAGAATCGTGCTTGGGTTTCGGAGAATGGGACGTTTGCTTTCGGGTTTTCTCCGGTGGAGTCTGACGACCGGTATCAGTTGGGGATTTGGTTTGGGCAGCTTCCGGGAGATAGAACCATGGTTTGGTCTGCTAGCAGAAACTCCCCCGTCGGAAAAGATGCAGTACTGGAGCTCGACAGCACAGGAAACCTTCTCCTGCTCGACGGAGATGCAACAGTTTGGTCGTCAAATACCTCCGGCGAAGGTGTTGAGACGGCATACATGTCTGAATCCGGCAACTTCATCTTGTACAATGGCACCAACTTCCCTTTATGGCAGAGCTTTTCTCACCCTTCAGATACTCTCCTCCCAAACCAACCTCTCACAGCTTCAATGGAGCTCACATCCTCCTCACCTGCGCATGGTGGTTACTACACTCTCCAGATGCTGCAGCAGCCTACTTCCCTCAGCCTTGGACTCATCTACAACTTGCCCGACTCTTACATCACCTCGTTGCACTTTGGGATCATGTATGGGTCGTCATCTGATGGGGCGGTTTATGTTTACAAAAGTGATACTGATGAGAAAGGGCTGTCTTCGTCTGTGAATCAGACAGTTAGGCCATTAGTTCTTCGAAGACTGATACTCGAGATGAATGGGAATTTGAGGCTGTATCGTTGGGACGATGATGTGAACGGCACTCGCCAATGGGTGCCTGAATGGGCTGCAGTTTCTAACCCATGTGATATTGCTGGGGTTTGCGGAAATGGGGTGTGTAGCTTGGACAGAAGCAAGACTAATGCCTCGTGTACATGCCTGCCGGGGTCTTCTAAGGTGGGAGACAGCGGCCAGTGCTCAGAGAATTCGTCGGTGTCAACTGGGAAATGTGATAATAATCATCGGAATTCAACTGCTTCCAAGCTGAAGATGTCGATAGTACAGCAAACTAACTACTATTACCCTGAATCTTCGATTATAGCAAATTATAGTAACATGTCCCCATTATCAAAGTGTGGGGATGCTTGTTTATCAGACTGTGATTGTGTTGCTTCTGTGTATGGGCTGAGTGAGGAAAAGCCTTACTGTTGGCTGCTGAACAGCTTGGAGTTCGGTGGATTCGAGGACACGAGTTCGACCTTGTTTGTGAAGGTTGGGCCTAATGGGTCACCTGAAGGCAACGCAACAGGATCTGGGGATTCATCTGATGGCCTCCGGGACAAGGTCTTGGTTCTTCCAATTGTTCTCAGCATGATTGTCCTTGTAGCACTCCTCTGCTTCTTGTTATATCACACTGTGTACAGAAGGAGGGCCTTGAAGAGATCCCTGGAAAGCTCCTTGATTGTGTCCGGTGCTCCAATGAATTTCAGTTACCGCGATTTACAGTCCAGAACCGGCAATTTTTCGCAGTTGCTCGGCACAGGAGGGTTTGGGAGTGTATACAAGGGAAGCCTTTCAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGGTTTTGCCTCATGGGGAGAAGGAATTCATAACTGAAGTGAACACCATTGGCTCTATGCATCACATGAACCTGGTTCGCCTATGTGGCTACTGCTCGGAAGGCTCTCACCGGCTTCTGGTTTATGAGTTCATGAAAAATGGTTCCTTGGACAAGTGGATATTCCCCTCAAAGCATTGCCGGGACAGACTGCTAGATTGGGGAACTCGTTTCCATATAGCCATTGCTACTGCACAAGGGATTGCTTATTTTCATGAGCAGTGCAGGAATCGGATAATCCACTGTGATATCAAGCCTGAAAACATACTTCTAGATGAGAATTTCTGTCCAAAAGTTTCAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTCACATGTTGTCACTATGGTGAGAGGAACTAGGGGCTATCTGGCTCCAGAATGGGTTAGCAACCGGCCTATTACTGTAAAAGCCGATGTCTACAGTTACGGAATGCTTCTCCTGGAGATCGTTGGTGGCCGGAGAAACCTTGACATGACCTTTGATGCAGAAGACTTCTTCTATCCTGGGTGGGCTTTTAAGGAAATGAGTAATGGGACGACAAGAAAAGTTGCAGACAGGCGACTGGAAGGGGCAGTGGAGGAAGAGGAGCTAGAAAGAGCATTGAAAACTGGCTTTTGGTGCATTCAAGATGAGGTTTTCATGAGGCCTTCAATGGGGGAAGTGGTGAAGATGTTGGAAGGATCACTTGAAATCAACACACCGCCAATGCCACAGACAGTTCTGGAGCTCATGGAGGAGGGCTTGGACAATGTATACAGAGCCATGAAGAGAGAGTTCAACCAGTCCAGCTTCTTCACCATCAATAATATGTCATGGGAAAGGCTATTAAGATGCAAACTACATAATTCAAAATGCATTATATGCAACGAAATTATTTACCATGAAATTTATTTATATTGTTTTTCTTTCTAA 2535 47.57 MASSSSPTRVLFFLALAGLVGVATGSVGLGARLVAKENRAWVSENGTFAFGFSPVESDDRYQLGIWFGQLPGDRTMVWSASRNSPVGKDAVLELDSTGNLLLLDGDATVWSSNTSGEGVETAYMSESGNFILYNGTNFPLWQSFSHPSDTLLPNQPLTASMELTSSSPAHGGYYTLQMLQQPTSLSLGLIYNLPDSYITSLHFGIMYGSSSDGAVYVYKSDTDEKGLSSSVNQTVRPLVLRRLILEMNGNLRLYRWDDDVNGTRQWVPEWAAVSNPCDIAGVCGNGVCSLDRSKTNASCTCLPGSSKVGDSGQCSENSSVSTGKCDNNHRNSTASKLKMSIVQQTNYYYPESSIIANYSNMSPLSKCGDACLSDCDCVASVYGLSEEKPYCWLLNSLEFGGFEDTSSTLFVKVGPNGSPEGNATGSGDSSDGLRDKVLVLPIVLSMIVLVALLCFLLYHTVYRRRALKRSLESSLIVSGAPMNFSYRDLQSRTGNFSQLLGTGGFGSVYKGSLSDGTLVAVKKLDKVLPHGEKEFITEVNTIGSMHHMNLVRLCGYCSEGSHRLLVYEFMKNGSLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVSDFGLAKLMGREHSHVVTMVRGTRGYLAPEWVSNRPITVKADVYSYGMLLLEIVGGRRNLDMTFDAEDFFYPGWAFKEMSNGTTRKVADRRLEGAVEEEELERALKTGFWCIQDEVFMRPSMGEVVKMLEGSLEINTPPMPQTVLELMEEGLDNVYRAMKREFNQSSFFTINNMSWERLLRCKLHNSKCIICNEIIYHEIYLYCFSF* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18826204 18834557 + Vvi16g814 Vvi16g814 778463

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g814 844 ProSiteProfiles Bulb-type lectin domain profile. 26 145 IPR001480 -
Vvi16g814 844 Pfam Protein kinase domain 497 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g814 844 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 5 810 - -
Vvi16g814 844 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 163 IPR036426 -
Vvi16g814 844 ProSiteProfiles Protein kinase domain profile. 494 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g814 844 SUPERFAMILY Protein kinase-like (PK-like) 473 767 IPR011009 -
Vvi16g814 844 Gene3D Transferase(Phosphotransferase) domain 1 570 783 - -
Vvi16g814 844 CDD B_lectin 38 147 IPR001480 -
Vvi16g814 844 Gene3D - 28 146 IPR036426 -
Vvi16g814 844 ProSitePatterns Serine/Threonine protein kinases active-site signature. 617 629 IPR008271 GO:0004672|GO:0006468
Vvi16g814 844 PIRSF SRK 2 814 IPR024171 GO:0004674
Vvi16g814 844 PANTHER OS07G0415500 PROTEIN 5 810 - -
Vvi16g814 844 Gene3D Phosphorylase Kinase; domain 1 458 569 - -
Vvi16g814 844 SMART blect_4 32 147 IPR001480 -
Vvi16g814 844 ProSitePatterns Protein kinases ATP-binding region signature. 500 523 IPR017441 GO:0005524
Vvi16g814 844 Pfam D-mannose binding lectin 75 160 IPR001480 -
Vvi16g814 844 Pfam S-locus glycoprotein domain 223 304 IPR000858 GO:0048544
Vvi16g814 844 SMART serkin_6 494 806 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g814 - - - vvi:100243904 1615.51
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g814 . . . . . . . . . . . . . . . . . Bhi01g01426 . . . . . . . . . . . . . Cone1ag1203 Cone5ag0905 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g02176 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008718 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76282 PF00069 Pkinase 1.30E-46 CL0016 Vvi PK