Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g815 ATGGCTACAAGCCCCTTTCGATATTTTATTTCCCTTTTTCTGCTTTTGCTCTGTTTCGAAGCCTGTTTGAGGGTGGGTGATGCTAAAGTTGGGTGCAGAGAGAGGGAGAGGCAAGCTCTCCTTCACTTCAAACAAGGTGTTGTCGATGACGATGGAGTGCTTTCTTCATGGGGGAATGGGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTCAAGTGTAACAACCAGACGGGTCATGTGATCAGGCTTGATCTTCATGCCCAATCTTTGGGAGGTAAGATTGGTCCTTCATTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTCAGCTCGAATGATTTTGAAGGAATTCTTCCCACTCAACTCGGTAATCTTTCCAACTTGCAATCCCTTGATCTTGGCTATAATTATGGGGATATGACCTGTGGAAACCTTGACTGGCTTTGTCACCTTCCTTTCTTAACACACCTTGACTTGAGTTGGGTTAATCTTAGTAAAGCAATCCATTGGCCCCAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTATACTTGATTGATACTCAGCTTCCTTCGATTATTCCAACAATATCCATTTCCCATATTAATTCTTCTACTTCTCTTGCTGTGCTTCATCTCCCCTCGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTTGGAATGATCTAAATGGTTCAACTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTCGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTGGAACAAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTGATCTCTCTTTGAATGAACTTGAAGGACTTCAGCTGGGTTGCATCTCAAGGATTAGTAGGTGA 990 43.03 MATSPFRYFISLFLLLLCFEACLRVGDAKVGCRERERQALLHFKQGVVDDDGVLSSWGNGEDKRDCCKWRGVKCNNQTGHVIRLDLHAQSLGGKIGPSLAELQHLKHLNLSSNDFEGILPTQLGNLSNLQSLDLGYNYGDMTCGNLDWLCHLPFLTHLDLSWVNLSKAIHWPQAINKMPSLTELYLIDTQLPSIIPTISISHINSSTSLAVLHLPSNGLTSSIYPWLFNFSSSLVHLDLSWNDLNGSTPDAFGNMTTLAYLDLSSNELRGSIPDAFGNMTTLAYLDLSWNKLRGSIPDAFGNMTSLAYLDLSLNELEGLQLGCISRISR* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18849597 18853350 + Vvi16g815 Vvi16g815 778464

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g815 329 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 12 117 - -
Vvi16g815 329 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 119 264 - -
Vvi16g815 329 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 255 318 - -
Vvi16g815 329 SUPERFAMILY L domain-like 32 322 - -
Vvi16g815 329 Gene3D Ribonuclease Inhibitor 202 329 IPR032675 -
Vvi16g815 329 PANTHER LRR RECEPTOR-LIKE KINASE 12 117 - -
Vvi16g815 329 PANTHER LRR RECEPTOR-LIKE KINASE 255 318 - -
Vvi16g815 329 PANTHER LRR RECEPTOR-LIKE KINASE 119 264 - -
Vvi16g815 329 Pfam Leucine Rich repeat 231 246 IPR001611 GO:0005515
Vvi16g815 329 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vvi16g815 329 Gene3D Ribonuclease Inhibitor 32 201 IPR032675 -
Vvi16g815 329 Pfam Leucine rich repeat 104 162 IPR001611 GO:0005515
Vvi16g815 329 Pfam Leucine rich repeat 249 292 IPR001611 GO:0005515
Vvi16g815 329 SMART LRR_typ_2 232 254 IPR003591 -
Vvi16g815 329 SMART LRR_typ_2 102 125 IPR003591 -
Vvi16g815 329 SMART LRR_typ_2 279 302 IPR003591 -
Vvi16g815 329 SMART LRR_typ_2 303 326 IPR003591 -
Vvi16g815 329 SMART LRR_typ_2 255 278 IPR003591 -
Vvi16g815 329 SMART LRR_typ_2 178 201 IPR003591 -
Vvi16g815 329 PRINTS Leucine-rich repeat signature 258 271 - -
Vvi16g815 329 PRINTS Leucine-rich repeat signature 303 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g815 - - K13466 vvi:100853486 608.601
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g815 . . . . . . . . . . . . . . . . . Bhi01g01563 Tan01g0803 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6