Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g817 ATGGGTACAAGCCCCTTTCGATATTTTATTTCCTTTTTTCTGCTTATGCTATGTTTTGAAGCCTGTTTGAGGGTGGGTGATGCTAAAGTTGGGTGCAGAGAGAGGGAAAGGCAAGCACTCCTTCACTTCAAACAAGGTGTTGTGGATGATTTTGGAATGCTTTCTTCTTGGGGGAATGGGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTCGAGTGTGACAACCAGACGGGTCATGTGATCGTGCTTGATCCTCATGCTCCGTTTGATGGATATTTGGGAGGTAAGATTGGTCCTTCATTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTCAGCTGGAATGATTTTGAAGGAATTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCGGCCATAGTTTTGGGTTTATGACCTGTGGAAACCTTGAGTGGCTTTCTCACCTTCCTTTGTTAACACACCTTGACTTGAGTGGGGTTCATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTGTACTTGAGTTATACTCAGCTTCCTCCGATTATTCCAACAATATCCATTTCCCATATTAATTCCTCCACTTCTCTTGCTGTGCTTGATCTCTCCGTGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGCAGCCTTGTTCATCTTGACCTCTCTATGAATGATCTAAATGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGGTCTCTATGGGAACGAGCTACGTGGTTCAATTCCGGATGCTTTTGGAAACATGACTAGTCTGGCATATCTTTATCTCTCTTCAAATCAGCTTGAAGAACTTCAATTGGGTTGCATCTCAAGGATTAACAAGGTCTTAGTTCTTCCAATTGTTCTCAGCATGACTGTCCTTGTAGGACGACTCTGCTTCTTGTTATACCACAGTGTGTACAGGAGGAGGGCCTTGAAGAGAGCCCTGGAAAGCCCCTTGATTGTGTCCGGCGCTCCAATAAATTTCAGTTACTGTGATTTGCAGTGCAGAACCGGCAATTTGCACAGAGTTTGGGAGTGTATACAAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGCCTCTTGGGAAGAAGGAATTCATAACTGAAGTGAAAACTATTGGCTCTATGCATCACATGAACCTGGTTCAACTCTGCGGCTACTGCTCAGAAGGCTCTCACCAGCTTCTGGTTTATGAGTTCATGAAAAACGGTTTCTTGGACAAGTGGATATTTCCCTCAAAGCATTGTCGGGACAGACTGCTAGATTGGGGAACTCGCTTCCATATAGCCATTGCTACTGCACAAGGTATTGCTTATTTTCATGAGCAGTGCAGGAACCGGATCATCCACTGTGATATCAAGCCCGAAAACATACTTCTAGATGAGAATTTCTATCCAAAAGTTTCAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTGA 1533 43.64 MGTSPFRYFISFFLLMLCFEACLRVGDAKVGCRERERQALLHFKQGVVDDFGMLSSWGNGEDKRDCCKWRGVECDNQTGHVIVLDPHAPFDGYLGGKIGPSLAELQHLKHLNLSWNDFEGILPTQLGNLSNLQSLDLGHSFGFMTCGNLEWLSHLPLLTHLDLSGVHLSKAIHWPQAINKMPSLTELYLSYTQLPPIIPTISISHINSSTSLAVLDLSVNGLTSSIYPWLFNFSSSLVHLDLSMNDLNGSIPDAFGNMTTLAYLGLYGNELRGSIPDAFGNMTSLAYLYLSSNQLEELQLGCISRINKVLVLPIVLSMTVLVGRLCFLLYHSVYRRRALKRALESPLIVSGAPINFSYCDLQCRTGNLHRVWECIQDGTLVAVKKLDKPLGKKEFITEVKTIGSMHHMNLVQLCGYCSEGSHQLLVYEFMKNGFLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFYPKVSDFGLAKLMGREH* 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18879626 18886900 + Vvi16g817 Vvi16g817 778466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g817 510 Pfam Protein kinase domain 366 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g817 510 PANTHER OS07G0415500 PROTEIN 271 510 - -
Vvi16g817 510 PANTHER OS07G0415500 PROTEIN 11 248 - -
Vvi16g817 510 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Vvi16g817 510 ProSiteProfiles Protein kinase domain profile. 357 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g817 510 Gene3D Phosphorylase Kinase; domain 1 364 430 - -
Vvi16g817 510 Pfam Leucine Rich Repeat 107 129 IPR001611 GO:0005515
Vvi16g817 510 SMART LRR_typ_2 181 205 IPR003591 -
Vvi16g817 510 SMART LRR_typ_2 282 305 IPR003591 -
Vvi16g817 510 SMART LRR_typ_2 258 281 IPR003591 -
Vvi16g817 510 SMART LRR_typ_2 105 128 IPR003591 -
Vvi16g817 510 Pfam Leucine rich repeat N-terminal domain 35 75 IPR013210 -
Vvi16g817 510 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 271 510 - -
Vvi16g817 510 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 11 248 - -
Vvi16g817 510 SUPERFAMILY Protein kinase-like (PK-like) 364 508 IPR011009 -
Vvi16g817 510 Gene3D Transferase(Phosphotransferase) domain 1 431 510 - -
Vvi16g817 510 SUPERFAMILY L domain-like 32 312 - -
Vvi16g817 510 SMART serkin_6 358 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g817 510 Pfam Leucine rich repeat 237 295 IPR001611 GO:0005515
Vvi16g817 510 Gene3D Ribonuclease Inhibitor 204 308 IPR032675 -
Vvi16g817 510 Gene3D Ribonuclease Inhibitor 32 203 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g817 - - - vvi:100262816 585.104
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g817 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76284 PF00069 Pkinase 6.80E-26 CL0016 Vvi PK