Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g820 ATGACTGTCCTTGTAGGACTCCTCTGCTTGTTGTTATACCATAGTGTGTACAGGAGGAGGGCCTTGAAGAGAGCCTTGAAAAGCTCCTTGATTGTGTCCGGTGCTCCAATGAATTTAAGTTACCACGATTTGCAGCGTAGAACTGGCAATTTGCACAGGGTTTGGGAGTGTATACAAGATGGGACATTGGTTGCAGTGAAGAAGCTTGACAAGCCTCTTAGGAAGAAGGAATTCATAACTGAAGTGAACACTATTGGCTCTATGCATCGCATGAACCTGGTTCGACTCTGCGGCTACTGCTCAGAAGGCTCTCAACAGCTTCTGGTTTATGAGTTCATGAAAAACGGTTTCTTAGACAAGTGGATATTTCCCTCAAAGCATTGCCGGGACAGATTGCTAGATTGGGGAACTCGCTTCCATATAGCCATTGCTACTGCACAAGGGATTGCTTATTTTCATGAGCAGTGCAGGAACCGGATCATCCACTGTGATATCAAGCCCGAAAACATACTTCTAGATGAGAATTTCTGTCCAAAAGTTTTAGACTTTGGACTAGCAAAGCTGATGGGCAGAGAGCATTGA 582 44.85 MTVLVGLLCLLLYHSVYRRRALKRALKSSLIVSGAPMNLSYHDLQRRTGNLHRVWECIQDGTLVAVKKLDKPLRKKEFITEVNTIGSMHRMNLVRLCGYCSEGSQQLLVYEFMKNGFLDKWIFPSKHCRDRLLDWGTRFHIAIATAQGIAYFHEQCRNRIIHCDIKPENILLDENFCPKVLDFGLAKLMGREH* 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18906218 18911407 + Vvi16g820 Vvi16g820 778469

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g820 193 SMART serkin_6 41 192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g820 193 PANTHER OS07G0415500 PROTEIN 1 193 - -
Vvi16g820 193 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Vvi16g820 193 Pfam Protein kinase domain 49 191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g820 193 ProSiteProfiles Protein kinase domain profile. 40 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g820 193 Gene3D Transferase(Phosphotransferase) domain 1 114 193 - -
Vvi16g820 193 SUPERFAMILY Protein kinase-like (PK-like) 41 191 IPR011009 -
Vvi16g820 193 Gene3D Phosphorylase Kinase; domain 1 47 113 - -
Vvi16g820 193 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE PLANT 1 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g820 - - - vvi:100243904 325.094
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g820 . . . . . . . . . . . . . . . . . Bhi01g01429 . . . . . . . . . . . . . . . . . Lsi05g01175 . . . . . . . . . . . . . . . . . . Cpe09g00053 . . . . . . . . . . . . . . . . . Chy06g01280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76285 PF00069 Pkinase 8.00E-25 CL0016 Vvi PK