Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g823 ATGGAGAAAATGCAGTATGCTGAGGAACTTGTGAGGGAGTTTCTTGTCTTTAGAGGGTTTACAAATACACTGCAAGCTTTTGAGGGAGAGTTATGCACTGATATTGGTAAAGGTTTTCAAGTGGATAAGATATTAGATTTAATTTTCTCAGTGTACATTCCCAAGTTTCAGGCAGAAAAATTAGTTTGTCTGCTGAGCTTTTTTAAGCAGTGCTTTTCTTCATCATCTGAGACTGTACTTATTGCTACACTATCAAAATTAGAGGTGTCTATTCTACGCTACTATATTGTCCATGCCATACAATCAGGAAGAACAGAAAGGGTTATAGAGTTTTTTGGAATGAATGGCAATGACCTGCTGCAAAGAGGACAGGACTGGACTCCATGGTTTGCTGTTCCATATCTAAAGAACCCAAGCTTGGATCCCCAGTTTCGGATTTATTTCTCAAGGGAGTGGTTGGAAGCTTTGCGCCTCTCAGTCAGGAATTTCTTAAAGGTGTCCTTAACTTATCCACGCATCCCTGCTCTGCTGAAGATTTGTTCTGAAAAGAATACAGTGAACCGTCTCAAAAAAGACATCAAGCAACTTAATCTTAAGTTGTCTCAACTTCAGGCATTATTGGAGGAAAAAGAGGCTCAGCTATTCCAGTCAAGGAGTTATGCTCCATCTACAATAGAAGAAAGCATGGGTGGAACGAACAGCTCAACATATTCAGTACCTGGGACTCTTCTTAGTGGCTTGCATCAGGGAAGTATTCTTCCCTCTAGATTTCCTCATGAAACTTGTGCTGCTACAAATCAACATCTGGGTGAAAGAGAGTTGGCTCAGGAATTGGATGACACAGGGGTGGCCAAGATTTTATCAGAGATGAGTCCATCCAACTCTGATCGTGGTTCAAGTTCATTAGTGCATCTTCATCTTGGAGATGCTGGAGCAAGTAATATGCTTGAGATGTCCCAAGATGACTTTTGTACTGAAAATGGCAGAGAAATGGAAGGAGAAGAGGAATTCCCAGAAGTTAAAGTGGATTTCCAGGAAACATTCTTGGGCCACACGAGTCCAATCAGCCGTTGCCGTTTTTCTGTATCTGGAGACAATATTGCCAGCGCTTCAGTGGATGGCACAGTCAGGATTTGGACATATGATTCTTCAACCCCAACATCTAGAAACGCAACCATCTATTGTGGGGCCGAGATCATGTCTCTTGAATGGGAGTGTAAATCTGATCGTTTGCTTCTTATAGGCACTGCTGATGGAGGCATTAAAGCTTGGAATGTTGATGCAAAGAGAGTTGTTTGTGATCTTAACACTACTGAAGCATTTCCAAGTGTGTTGGATCTGAAATGTAGCCCTGTGGAGCCAATATTTGTTTCTGCAGCAGCATCCAGAGGGCAAGGGCGAAATTATTTTGATAAATTTGGTTTCGCTTCTTTGACTGTTTGGAACATGAAGACTTGGAAGGCCGTGACAGTTCTTCCTCTTGGTGAAGATCCACCAGCAATTACTTCTCTATGCTTTAACCACAATGGGAAAATTTTAGCTGCTGCTGCCACTGATGGAATGATTCACATGTTTGATATGTCTGCTGGACTACAAATTACTGGTTGGCCTGCTCATGACTCTGCTATAAGCTCTCTACTTTTTGGTCCTGATGAAACAAGCATTTATAGTTTGGGGTCTGATGGAAAGATATTGGAATGGAGCTTGCACAACCAAGGTCAAATTCTTTGGTCAAGAAATTGTAGCAGGTTCTGCAACATTGAGAGCTCAAGACACTATAGGCATGAAATGTCATTAGATGCTAATGGGAGGAGATTATTGGTAACATCTGGTTCAGTAAGAGCACCCATATATCAGGTTCGAGGTCATACTAGTGGGTGGAGAACATTGCCTCATACTGCAGCTATAACAACTGTAGACTGGCACCCGACATTGCCCATCCTTGTGACTGGTTCAGCTGATCACTCTGTTCGTGTCACATCTATATTATAA 1992 41.97 MEKMQYAEELVREFLVFRGFTNTLQAFEGELCTDIGKGFQVDKILDLIFSVYIPKFQAEKLVCLLSFFKQCFSSSSETVLIATLSKLEVSILRYYIVHAIQSGRTERVIEFFGMNGNDLLQRGQDWTPWFAVPYLKNPSLDPQFRIYFSREWLEALRLSVRNFLKVSLTYPRIPALLKICSEKNTVNRLKKDIKQLNLKLSQLQALLEEKEAQLFQSRSYAPSTIEESMGGTNSSTYSVPGTLLSGLHQGSILPSRFPHETCAATNQHLGERELAQELDDTGVAKILSEMSPSNSDRGSSSLVHLHLGDAGASNMLEMSQDDFCTENGREMEGEEEFPEVKVDFQETFLGHTSPISRCRFSVSGDNIASASVDGTVRIWTYDSSTPTSRNATIYCGAEIMSLEWECKSDRLLLIGTADGGIKAWNVDAKRVVCDLNTTEAFPSVLDLKCSPVEPIFVSAAASRGQGRNYFDKFGFASLTVWNMKTWKAVTVLPLGEDPPAITSLCFNHNGKILAAAATDGMIHMFDMSAGLQITGWPAHDSAISSLLFGPDETSIYSLGSDGKILEWSLHNQGQILWSRNCSRFCNIESSRHYRHEMSLDANGRRLLVTSGSVRAPIYQVRGHTSGWRTLPHTAAITTVDWHPTLPILVTGSADHSVRVTSIL* 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18969067 18978429 + Vvi16g823 Vvi16g823 778472

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g823 663 SUPERFAMILY WD40 repeat-like 333 659 IPR036322 GO:0005515
Vvi16g823 663 Coils Coil 186 213 - -
Vvi16g823 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 629 663 - -
Vvi16g823 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 536 569 IPR001680 GO:0005515
Vvi16g823 663 Gene3D - 471 662 IPR015943 GO:0005515
Vvi16g823 663 Pfam WD domain, G-beta repeat 346 379 IPR001680 GO:0005515
Vvi16g823 663 Pfam WD domain, G-beta repeat 617 659 IPR001680 GO:0005515
Vvi16g823 663 SMART WD40_4 529 568 IPR001680 GO:0005515
Vvi16g823 663 SMART WD40_4 386 425 IPR001680 GO:0005515
Vvi16g823 663 SMART WD40_4 485 526 IPR001680 GO:0005515
Vvi16g823 663 SMART WD40_4 623 661 IPR001680 GO:0005515
Vvi16g823 663 SMART WD40_4 341 380 IPR001680 GO:0005515
Vvi16g823 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 348 389 IPR001680 GO:0005515
Vvi16g823 663 Gene3D - 264 464 IPR015943 GO:0005515
Vvi16g823 663 PANTHER OS05G0299300 PROTEIN 1 662 - -
Vvi16g823 663 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 348 383 - -
Vvi16g823 663 Pfam Anaphase-promoting complex subunit 4 WD40 domain 493 548 IPR024977 -
Vvi16g823 663 ProSiteProfiles Trp-Asp (WD) repeats profile. 629 663 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g823 K24760 WDR91; WD repeat-containing protein 91 - vvi:100261168 1279.62
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g823 . . Bda05g00106 . Bpe03g00248 . Bma10g01272 . Cmo16g00090 . . . . . Sed13g0100 . Cpe14g00070 Bhi01g01430 Tan01g0171 Cmetu06g1598 . Hepe07g0105 Mch10g0107 . . . . . . . . . . Cone14ag0043 . Lsi05g01174 . . Cme06g01058 Blo07g00355 . . . . . . . . . . . . Car16g00076 . . . . . . . . . . Cla05g00934 Cam05g1021 Cec05g1025 Cco05g1021 Clacu05g1010 Cmu05g0963 Cre05g1044 . Csa03g02177 Chy06g01279 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010151 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 32