Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g824 ATGACCTCTCTTAGAACTGTCAACCTCACTAGGAATCAACTTGAAGGTGAGATTCCAAAATCCTTCAACAATTTATGTAATTTACAGATACTGAAGTTGCATCGAAACAATCTTGCTGGAGTGCTTGTAAAAAACTTGTTGGCTTGTGCAAATGACACATTGGAAATTTTGGATTTATCTCATAACCAATTCATTGGATCACTCCCTGATTTGATTGGATTTTCATCGTTGACAAGGTTGCATCTTGGACATAACCAACTAAATGGGACTTTACCTGAAAGCATAGCACAGCTAGCTCAACTTGAATTGTTGAAAATTCCTTCAAATTCATTGCAAGGCACTGTCTCTGAGGCCCACCTCTTCAGTCTCTCCAAATTGCAACGTTTGGACTTATCTTTCAACTCCCTGTTGACTTTGAATTTGAGCTCAGACTGGGTTCCCCAATTTCAACTCACTCATATATTTTTAGCCTCTTGCAAACTGGGACCACGTTTTCCAGGCTGGCTTAGAACTCAGAAAGGTGTTGGTTGGCTTGATATCTCAGGTTCTGGAATTTCGGATGTCATCCCCAATTGGTTTTGGAATTTCACTTCCAATTTGAATCGGTTAAATATTTCCAACAATCAGATCACTGGTGTTGTGCCGAATGCATCAATAGAATTTTCTCGTTTCCCTCAAATGGATATGAGTTCAAACTACTTCGAGGGTTCAATACCAGTATTTATTTTTTATGCTGGATGGTTGGATCTCTCTAAGAACATGTTTTCAGGATCAATTTCTTCGTTGTGTGCGGTTAGTCGCGGAGCTTCGGCCTATCTTGACCTCTCGAATAATCTGCTGTCAGGTGAACTACCCAACTGTTGGGCACAATGGGAAGGATTAGTAGTTCTTAATTTAGAAAATAACAATTTCTCTGGGAAAATTCAAGATTCGATTGGCTCCTTAGAAGCAATTGAATCATTGCATTTAAGAAACAACAAGTTAACCGGAGAATTGCCTTTGTCTTTGAAGAATTGCACAAAGTTGAGGGTAATTGATTTAGGAAGGAATAAACTGTGTGGAAACATACCATCTTGGATAGGAAGAAGTCTCCCAAATTTGGTTGTTCTTAATTTACGATTCAATGAATTTTATGGAAGCATACCTATGGATATGTGTCAACTGAAAAAAATTCAAATATTGGACCTCTCCAACAATAATATCTCAGGTATGATACCAAGATGTTTCAATAATTTCACAGCCATGGTTCAACAAGGGAGTTTGGTCATCACTTATAATTACACAATTCCATGCTTTAAACCGTTGTCTCGTCCAAGCTCTTATGTTGATAAGCAAATGGTTCAATGGAAAGGAAGAGAACTTGAGTATGAGAAAACTCTTGGACTTTTAAAGAGTATTGATCTTTCAAGCAACGAACTAAGTGGAGAAATTCCTAGAGAAGTAACAAATCTTTTAGATTTGATTTCATTGAACTTGTCGAGAAATTTTTTGACTGGATTAATCCCTCCTACAATTGGTCAATTGAAAGCAATGGATGCTCTTGATTTGTCTTGGAATCGACTTTTTGGTAAAATTCCTTCCAATTTATCTCAAATAGATCGCCTCAGTGTATTAGACCTATCACACAATGACTTCTGGGGTAAAATTCCAAGTGGGACACAACTACAAAGCTTCAATTCTTCGACATACGAGGGAAATCCCAAACTTTGTGGACCACCCCTTTTGAAAAAATGTCTAGAAGATGAAAGAGGGGAACATTCCCCTCCCAATGAAGGCCATGTTCAAAAAGAGGCAAATGACTTATGGTTTTATATTGGGGTTGCTCTTGGATTCATTGTAGGATTTTGGGGAATCTGTGGCACTTTACTCCTCAACAGCTCATGGAGAAATGCCAACTTCATATCCTTGAAAAAACCAAAAATTTGA 1926 37.9 MTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVKNLLACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQLELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKLGPRFPGWLRTQKGVGWLDISGSGISDVIPNWFWNFTSNLNRLNISNNQITGVVPNASIEFSRFPQMDMSSNYFEGSIPVFIFYAGWLDLSKNMFSGSISSLCAVSRGASAYLDLSNNLLSGELPNCWAQWEGLVVLNLENNNFSGKIQDSIGSLEAIESLHLRNNKLTGELPLSLKNCTKLRVIDLGRNKLCGNIPSWIGRSLPNLVVLNLRFNEFYGSIPMDMCQLKKIQILDLSNNNISGMIPRCFNNFTAMVQQGSLVITYNYTIPCFKPLSRPSSYVDKQMVQWKGRELEYEKTLGLLKSIDLSSNELSGEIPREVTNLLDLISLNLSRNFLTGLIPPTIGQLKAMDALDLSWNRLFGKIPSNLSQIDRLSVLDLSHNDFWGKIPSGTQLQSFNSSTYEGNPKLCGPPLLKKCLEDERGEHSPPNEGHVQKEANDLWFYIGVALGFIVGFWGICGTLLLNSSWRNANFISLKKPKI* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 18986473 18988399 - Vvi16g824 Vvi16g824 778473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g824 641 Pfam Leucine rich repeat 53 111 IPR001611 GO:0005515
Vvi16g824 641 Pfam Leucine rich repeat 463 521 IPR001611 GO:0005515
Vvi16g824 641 Gene3D Ribonuclease Inhibitor 1 242 IPR032675 -
Vvi16g824 641 Pfam Leucine Rich Repeat 390 412 IPR001611 GO:0005515
Vvi16g824 641 Pfam Leucine Rich Repeat 3 25 IPR001611 GO:0005515
Vvi16g824 641 ProSiteProfiles Leucine-rich repeat profile. 53 75 IPR001611 GO:0005515
Vvi16g824 641 SUPERFAMILY L domain-like 2 257 - -
Vvi16g824 641 SMART LRR_typ_2 123 144 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 460 484 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 315 338 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 1 24 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 388 411 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 25 49 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 508 532 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 197 220 IPR003591 -
Vvi16g824 641 SMART LRR_typ_2 74 98 IPR003591 -
Vvi16g824 641 Gene3D Ribonuclease Inhibitor 245 587 IPR032675 -
Vvi16g824 641 SUPERFAMILY L domain-like 247 575 - -
Vvi16g824 641 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 1 637 - -
Vvi16g824 641 PANTHER LRR RECEPTOR-LIKE KINASE 1 637 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g824 - - K13466 vvi:104882119 782.711
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g824 . . . . . . . . . . . . . . . . . Bhi01g01561 Tan01g0806 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000631 0 9 0 0 0 3 1 3 2 3 2 1 1 1 2 1 1 9 1 0 2 3 3 8 11 1 2 4 3 9 86