Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g828 ATGACTACGAAATTGACTTTAATCATCTTACTTGAGCTTCGGAGGCATCTTGTCCGGTCATCTTTTGCAAGAAAAAAGGGAGAAGCATCGCTCCCAGTTGACCTGACATCAACATTTCCCATATCTGAGAACTCAAGCAGTCTTGCAGCTACTATAAGTTTTGTTGATCTTACGGGGAGTAAACGTGCTTCTCAGATATTATCAGAGGGTACAAGATTGAAAAAAGGTTGCCACATAAATCGCAGTTTACTAACCTTGGGAACTATTATTCGCAAACTAAGCAAATTAAGAAATGCGCACATACCATATAGAGGCTCTAAGCTAACACACATTCTACAGAATTCCTTAGGAGGCAATGCTAGAACTACCATCATTTGCACTATGAGCCCTACATACATAAATATTTTTCCATCCACCTCTGCCTCCATCTCAATGTGTCTCTTTCTCCATTTCTCTCTAGGGTTTTGCAGAGGTAGAGCTACATTCTCTCATGGTGGTGTTGATCGGAGGAGCCTAATTGAAAACGCAGATTCATCTGAAAAACTAGAGAAGAAGAGGCGTCATTTGAACACTGTGTCATCCCTCATGGCCCGAAACTCCAGTGTTTCTCCTGATAATCGAAGCGATCCAAAACTAGAGGTTCGATTCTCATCTCAATCTCAGTTCACCGTCTTTTGTGTTAAAGAGTTGTCAACAAATGCACATGTCAATGTAGTGATGTCAGATAAGATATTGGTAAAGCATTTGCAAAGAGAATTAGCTAGACTAGAGAGTGAGTTGAAAAGTTTAGGATTAAATCATGTTGCCAATGACTCTACCGCACTACTAGAGAAGAAAGAGCTTCTGATTAAAAAGATGGATAAAGAGACAAAATATTTAACTCAGTAA 888 39.53 MTTKLTLIILLELRRHLVRSSFARKKGEASLPVDLTSTFPISENSSSLAATISFVDLTGSKRASQILSEGTRLKKGCHINRSLLTLGTIIRKLSKLRNAHIPYRGSKLTHILQNSLGGNARTTIICTMSPTYINIFPSTSASISMCLFLHFSLGFCRGRATFSHGGVDRRSLIENADSSEKLEKKRRHLNTVSSLMARNSSVSPDNRSDPKLEVRFSSQSQFTVFCVKELSTNAHVNVVMSDKILVKHLQRELARLESELKSLGLNHVANDSTALLEKKELLIKKMDKETKYLTQ* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19047646 19073952 - Vvi16g828 Vvi16g828 778477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g828 295 PANTHER KINESIN-LIKE PROTEIN KIN-7H 38 135 - -
Vvi16g828 295 PANTHER KINESIN-LIKE PROTEIN KIN-7H 179 295 - -
Vvi16g828 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 261 IPR027417 -
Vvi16g828 295 Coils Coil 239 266 - -
Vvi16g828 295 PANTHER CENTROMERE PROTEIN E 179 295 - -
Vvi16g828 295 PANTHER CENTROMERE PROTEIN E 38 135 - -
Vvi16g828 295 Pfam Kinesin motor domain 45 134 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g828 295 PRINTS Kinesin heavy chain signature 51 69 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g828 295 PRINTS Kinesin heavy chain signature 101 122 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g828 295 Gene3D Kinesin motor domain 13 144 IPR036961 -
Vvi16g828 295 ProSiteProfiles Kinesin motor domain profile. 1 155 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi16g828 295 SMART kinesin_4 2 141 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g828 K11498 CENPE; centromeric protein E - vvi:100257491 154.066
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0031181 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 2