Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g829 ATGGTGGGTGATGCTAAAGTTGGGTGCACAGAGAGGGAGAGACAGGCTCTCCTTCACTTCAAACAAGGCCTTGTCCATGACTATAGAGTTCTTTCTTCATGGGGGAATGAGGAAGACAAAAGAGATTGTTGCAAATGGAGAGGAGTGGAGTGTAACAACCAGACGGGTCATGTGATCAGCCTTGATCTTCATGGAACGGATTTTGTCCGATATTTGGGAGGTAAGATTGACCCTTCACTGGCAGAGTTGCAGCACTTGAAGCATTTGAACCTTAGCTTCAACCGGTTTGAAGGAGTTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCGCCTATAATTTGGGAATGACCTGTGGAAACCTTGACTGGCTTTCTCGTCTTCCTTTGTTAACACACCTTGACTTGAGTGGGGTTGATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGCCTTCCCTAACTGAGTTATACTTGAGCCATACTCAGCTTCCTTGGATTATTCCAACAATATTCATTTCCCATACTAATTCTTCTACTTCTCTTGCTGTGCTTGATCTCTCCAGGAATGGTCTCACTTCTTCAATATACCCATGGTTGTTCAACTTCAGTAGTAGCCTTCTTCATCTTGACCTCTCTTATAACCATCTAAATGGTTCATTTCCGGATGCATTTACGAACATGGTTTTTCTGGAATCTTTTGTTCTCTCTCGGAATGAACTTGAAGGTGAGATTCCGAAGTTCTTTAGTGTCAGTTTCGTTCATTTGGATCTTTCTGGGAACCAGCTACATGGTTTAATTCCAGATGCTTTTGGAAACATGACTATTCTCGCATATCTTGATCTCTCCTCCAATCAACTTAAAGGTGAGATTCCGAAATCCTTGAGTACCAGCGTTGTTCATTTGGACCTTTCTTGGAACTTGCTGCATGGTTCAATTCCAGATGCTTTTGGAAACATGACTACTCTGGCATATCTTGATCTCTCTTCCAATCACCTTGAAGGTGAGATTCCGAAATCCTTGAGTACCAGCTTTGTTCATTTGGATCTTTCTTGGAACCAGCTGCATGGTTCGATTCTTGATGCTTTTGGAAACATGACTACTCTGGCATATCTAGATCTCTCTTCGAATCAACTCGAAGGTGAGATTCCGAAATCCTTGAGTACCAGCTTTGTTCATCTTGGCCTCTCTTATAATCATCTCCAGGGTTCAATTCCGGATGCTTTTGGAAACATGACTGCTCTGGCATATCTTCATCTCTCTTGGAATCAACTTGAAGGCACTCAATTACAAAGCTTTAGTGCCTCCACATACCAAGGAAATCCTAGACTTTGTGGGCCTCCACTCTTGAAGAAGTGTCTAGGAGATGAAACTAAGGAAGCCTCCTTCATTGATCCAAGTAACAGAGACAACATTCAAGATGACGCAAATAAGATATGGTTTTCTGGAAGTATTGTTCTTGGATTCATCATCGGATTTTGGGGAGTTTGTGGCACTTTACTACTCAATAGTTCATGGAGACATGCCTATTTCCAGTTCTTGAACAAGATAAAAGATCGGTTGTACATGACAACAACAACAATAACTATGAATAGACTACGGAGGAGTTTCCAAAGTTAA 1641 41.68 MVGDAKVGCTERERQALLHFKQGLVHDYRVLSSWGNEEDKRDCCKWRGVECNNQTGHVISLDLHGTDFVRYLGGKIDPSLAELQHLKHLNLSFNRFEGVLPTQLGNLSNLQSLDLAYNLGMTCGNLDWLSRLPLLTHLDLSGVDLSKAIHWPQAINKMPSLTELYLSHTQLPWIIPTIFISHTNSSTSLAVLDLSRNGLTSSIYPWLFNFSSSLLHLDLSYNHLNGSFPDAFTNMVFLESFVLSRNELEGEIPKFFSVSFVHLDLSGNQLHGLIPDAFGNMTILAYLDLSSNQLKGEIPKSLSTSVVHLDLSWNLLHGSIPDAFGNMTTLAYLDLSSNHLEGEIPKSLSTSFVHLDLSWNQLHGSILDAFGNMTTLAYLDLSSNQLEGEIPKSLSTSFVHLGLSYNHLQGSIPDAFGNMTALAYLHLSWNQLEGTQLQSFSASTYQGNPRLCGPPLLKKCLGDETKEASFIDPSNRDNIQDDANKIWFSGSIVLGFIIGFWGVCGTLLLNSSWRHAYFQFLNKIKDRLYMTTTTITMNRLRRSFQS* 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19081474 19085375 - Vvi16g829 Vvi16g829 778478

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g829 546 Pfam Leucine Rich repeat 349 370 IPR001611 GO:0005515
Vvi16g829 546 Pfam Leucine Rich repeat 327 343 IPR001611 GO:0005515
Vvi16g829 546 Pfam Leucine Rich repeat 373 389 IPR001611 GO:0005515
Vvi16g829 546 Pfam Leucine rich repeat N-terminal domain 12 52 IPR013210 -
Vvi16g829 546 PRINTS Leucine-rich repeat signature 284 297 - -
Vvi16g829 546 PRINTS Leucine-rich repeat signature 373 386 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 397 532 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 352 414 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 189 275 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 243 322 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 4 239 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 216 300 - -
Vvi16g829 546 PANTHER LRR RECEPTOR-LIKE KINASE 305 366 - -
Vvi16g829 546 Gene3D Ribonuclease Inhibitor 182 258 IPR032675 -
Vvi16g829 546 Gene3D Ribonuclease Inhibitor 305 350 IPR032675 -
Vvi16g829 546 Gene3D Ribonuclease Inhibitor 259 304 IPR032675 -
Vvi16g829 546 SUPERFAMILY RNI-like 151 449 - -
Vvi16g829 546 SUPERFAMILY L domain-like 41 180 - -
Vvi16g829 546 Pfam Leucine rich repeat 188 248 IPR001611 GO:0005515
Vvi16g829 546 Pfam Leucine rich repeat 262 316 IPR001611 GO:0005515
Vvi16g829 546 Pfam Leucine rich repeat 85 142 IPR001611 GO:0005515
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 243 322 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 216 300 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 305 366 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 189 275 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 397 532 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 352 414 - -
Vvi16g829 546 PANTHER OS11G0564900 PROTEIN 4 239 - -
Vvi16g829 546 Gene3D Ribonuclease Inhibitor 351 462 IPR032675 -
Vvi16g829 546 Gene3D Ribonuclease Inhibitor 9 181 IPR032675 -
Vvi16g829 546 SMART LRR_typ_2 83 106 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 281 305 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 419 442 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 212 234 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 373 397 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 158 181 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 327 351 IPR003591 -
Vvi16g829 546 SMART LRR_typ_2 261 280 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g829 - - - vvi:104877442 1115.91
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g829 . . . . . . . . . . . . . . . . . Bhi01g01547 . . . . Mch10g0565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6