Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g831 ATGTTGATAATAAGAATTTCATGCAAGATTTTATCTCAGCAGAATAAGATATCTCATATAATTCTCTCTTTTCCTTATTTTACAGGAGTTCTTCCCACTCAACTCGGAAATCTTTCCAACTTGCAATCCCTTGATCTCAGTGATAATTTTGAAATGAGCTGTGAGAACCTTGAGTGGCTTTCTTACCTTCCTTCCTTAACACACCTTGACTTGAGTGGGGTTGATCTTAGTAAAGCAATCCATTGGCCACAAGCAATTAATAAAATGTCTTCTTCCCTAACTGAGTTATACTTGAGCTTTACTAAGCTTCCTTGGATTATTCCAACAATATCCATTTCCCATACTAATTCTTCTACTTCTCTTGCTGTGCTTGATCTCTCCTTGAATGGTCTCACTTCTTCAATAAACCCATGGTTGTTCTACTTTAGTAGCAGCCTTGTTCATCTTGACCTCTTTGGTAATGATCTAAATGGTTCAATTCTAGATGCTCTTGGAAACATGACCAATCTGGCATATCTCGATCTCTCTTTGAATCAACTTGAAGGTGAGATTCCAAAGTCCTTTAGTATCAGCCTTGCTCATTTGGATCTTTCTTGGAACCAGCTGCATGGTTCAATTCCGGATGCTTTTGGAAACATGACTACTCTTGCATATCTTGACCTGTCTTCTAATCATCTAAATGGATCAATTCCGGATGCTTTGGGAAACATGACTACTCTGGCACATCTTTATCTCTCTGCGAATCAACTTGAAGGTGAGATTCCGAAATCCTTGAGAGATTTATGTAATTTACAAATATTATTATTTTTATATTTATCTGAAAATCAATTCAAAGGGTCATTTCCCGATCTTTCTGGATTTTCACAGTTGAGAGAATTATATCTTGGATTCAATCAACTAAATGGAACTTTACCTGAAAGTATTGGACAACTAGCTCAACTTCAAGGGTTGAACATTCGTTCAAATTCCTTGCAAGGAACTGTGTCGGCAAATCACCTTTTTGGTCTCTCCAAACTGTGGGATTTGGACTTGTCATTCAACTACCTAACAGTCAACATAAGCCTTGAGCAATCTAGTTGGGGTTTGCTCCATGTTGATCTCTCAAATAATCAACTATCAGGAGAACTACCCAAATGTTGGGAGCAGTGGAAATATTTAATTGTTCTTAATTTGACAAATAATAATTTTTCTGGGACAATTAAAAATTCGATTGGCATGTTACATCAGATGCAAACATTGCATTTACGTAATAATAGTTTAACTGGAGCACTGCCTTTGTCCTTAAAGAATTGCAGAGATTTGCGTCTTATAGATTTGGGAAAAAATAAATTGTCAGGAAAAATGCCCGCATGGATAGGAGGAAACCTATCAGATTTGATCGTTGTCAACCTAAGATCCAATGAATTTAATGGAAGCATACCTTTAAATCTTTGTCAATTGAAAAAGGTTCAAATGTTGGACCTTTCAAGCAACAATTTATCTGGAATTATACCAAAATGTCTCAACAATTTAACTGCCATGGGTCAAAATGGGAGTTTGGTCATTGCTTATGAAGAAAGATTGTTTGTTTTTGATTCATCAATATCCTATATTGATAATACAGTGGTTCAATGGAAAGGAAAAGAACTAGAGTATAAGAAAACTCTTAGACTTGTAAAGAGCATTGATTTTTCGAATAACAAGTTAAATGGAGAAATTCCGATAGAAGTAACTGATTTGGTAGAATTGTTGTCATTGAACTTATCAAAAAACAATTTGATTGGATCTATCCCTTTGATGATTGGTCAATTGAAATCATTGGATTTTCTTGATCTATCACAAAATCAGCTTCATGGTGGAATCCCTGTCAGTCTTTCTCAAATAGCAGGTCTAAGTGTTTTAGACCTATCAGATAACATCCTATCGGGTAAAATTCCATCAGGCACCCAATTGCACAGTTTTAATGCTTCCACATACGACGGAAATCCAGGACTTTGTGGGCCACCGCTTTTGAAAAAATGTCAAGAAGATGAAACTAAGGAAGTCTCCTTCACTAGTCTTATTAATGAAAAGGATATTCAAGATGATACAAATAATATATGGTTTTATGGAAATATTGTTCTTGGATTCATCATTGGATTTTGGGGAGTTTGCGGCACTTTATTACTCAACCGTTCATGGAGATATTCCTATTTCCAGACCCTGAACAAGATAAAAGACTGGTTGCACATGACAACAACAACAAATATAAATAGACTACGGAGGAGTTTCTAA 2253 35.69 MLIIRISCKILSQQNKISHIILSFPYFTGVLPTQLGNLSNLQSLDLSDNFEMSCENLEWLSYLPSLTHLDLSGVDLSKAIHWPQAINKMSSSLTELYLSFTKLPWIIPTISISHTNSSTSLAVLDLSLNGLTSSINPWLFYFSSSLVHLDLFGNDLNGSILDALGNMTNLAYLDLSLNQLEGEIPKSFSISLAHLDLSWNQLHGSIPDAFGNMTTLAYLDLSSNHLNGSIPDALGNMTTLAHLYLSANQLEGEIPKSLRDLCNLQILLFLYLSENQFKGSFPDLSGFSQLRELYLGFNQLNGTLPESIGQLAQLQGLNIRSNSLQGTVSANHLFGLSKLWDLDLSFNYLTVNISLEQSSWGLLHVDLSNNQLSGELPKCWEQWKYLIVLNLTNNNFSGTIKNSIGMLHQMQTLHLRNNSLTGALPLSLKNCRDLRLIDLGKNKLSGKMPAWIGGNLSDLIVVNLRSNEFNGSIPLNLCQLKKVQMLDLSSNNLSGIIPKCLNNLTAMGQNGSLVIAYEERLFVFDSSISYIDNTVVQWKGKELEYKKTLRLVKSIDFSNNKLNGEIPIEVTDLVELLSLNLSKNNLIGSIPLMIGQLKSLDFLDLSQNQLHGGIPVSLSQIAGLSVLDLSDNILSGKIPSGTQLHSFNASTYDGNPGLCGPPLLKKCQEDETKEVSFTSLINEKDIQDDTNNIWFYGNIVLGFIIGFWGVCGTLLLNRSWRYSYFQTLNKIKDWLHMTTTTNINRLRRSF* 751
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19098148 19102682 - Vvi16g831 Vvi16g831 778480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g831 750 SUPERFAMILY L domain-like 361 664 - -
Vvi16g831 750 PRINTS Leucine-rich repeat signature 216 229 - -
Vvi16g831 750 PRINTS Leucine-rich repeat signature 597 610 - -
Vvi16g831 750 Pfam Leucine Rich Repeat 484 504 IPR001611 GO:0005515
Vvi16g831 750 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 360 748 - -
Vvi16g831 750 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 170 257 - -
Vvi16g831 750 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 265 355 - -
Vvi16g831 750 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 15 176 - -
Vvi16g831 750 Gene3D Ribonuclease Inhibitor 362 676 IPR032675 -
Vvi16g831 750 Gene3D Ribonuclease Inhibitor 4 266 IPR032675 -
Vvi16g831 750 ProSiteProfiles Leucine-rich repeat profile. 40 61 IPR001611 GO:0005515
Vvi16g831 750 Gene3D Ribonuclease Inhibitor 267 361 IPR032675 -
Vvi16g831 750 PANTHER LRR RECEPTOR-LIKE KINASE 15 176 - -
Vvi16g831 750 PANTHER LRR RECEPTOR-LIKE KINASE 360 748 - -
Vvi16g831 750 PANTHER LRR RECEPTOR-LIKE KINASE 170 257 - -
Vvi16g831 750 PANTHER LRR RECEPTOR-LIKE KINASE 265 355 - -
Vvi16g831 750 SMART LRR_typ_2 167 190 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 573 597 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 191 212 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 407 430 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 480 503 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 213 237 IPR003591 -
Vvi16g831 750 SMART LRR_typ_2 287 311 IPR003591 -
Vvi16g831 750 SUPERFAMILY L domain-like 6 377 - -
Vvi16g831 750 SMART LRR_sd22_2 597 626 - -
Vvi16g831 750 SMART LRR_sd22_2 480 506 - -
Vvi16g831 750 SMART LRR_sd22_2 237 263 - -
Vvi16g831 750 SMART LRR_sd22_2 38 59 - -
Vvi16g831 750 SMART LRR_sd22_2 336 357 - -
Vvi16g831 750 SMART LRR_sd22_2 287 313 - -
Vvi16g831 750 Pfam Leucine rich repeat 18 73 IPR001611 GO:0005515
Vvi16g831 750 Pfam Leucine rich repeat 191 250 IPR001611 GO:0005515
Vvi16g831 750 Pfam Leucine rich repeat 288 349 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g831 - - K13466 vvi:100262023 880.167
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018037 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 6