Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g835 ATGGACATGGAAGGCTTGTCCGTGATCTGCGCTGGTCTGGGATCTATCGATGAGGACGATGGTGGGAATCGGATCGGCTACGCGAAGACCGACTATTGTTTGGATAATTTAAAGGATTTGTTGAGATTTCTGAGGCGTGATGATCCGCAGTCAAGATCAGTGTTCAAACAAGTATGCAAATGGAACACAGTTTCCAAAGATTTGATACCAATAATTGAACATTGTCAAGATGATCGCAACTTGGTGTTAAATGCTGTGAAGGTTTTGGTGTTTCTTACAATGCCTATTGAGGCTTCATCCAATGATATTTCACAACAGATAGAATATTTATGGGGGTTGAAGTCTTCAATTACACGCAGCAACACTATTGCGGTGGTTATGTCACTTCTTGAGAGCCCATTGGAAAATTTGGAATGTGAAGCATTCACAGAGGATGACTGGAAATTGGTCCAGCTTGTTCTTACTTTGTTTCGGAACATTTTAGCTATACAAGACATCTCATTGCAGCAGAAGGCTGGGGAATCTGCCAGTCAATTTTTATCCCTGAGAGACAGATTTTTGGAACTATTGTTCAATGAGAATGTGATGGACTTGATCTTGGTTATTACCCAGAATGTTGGTGGTTCTTCCAAATATTTCCGTCAAGATAACCTGCTTTTATTAGAAATTTTCCATTACATATTTATGGGTCAAGAGCCAGAGTTGCTTGCTAAAGCACATCTAAATTGTTCCAAGGTGGATGGGGACACCAAAACTTCACTTAATGGTCTCAAGTCCATAATAGAAGAGGAGGAAGAAAAAAGAAAACTTTTGAGGATACGGAAGTTAAATCGTTCTTCACAATTTTGTGGAGCCTTTACACGGGTTACCATGGATGGTTCAAAAACGTTTTTCAAGGGAAATCCAACTTTTACTTCTCATGATAAGTTTCTTAAACCTCAAGTTCCACGGGGTCCATTAAAAAAGATTGTGTGGGATCATGGAAGTTTACCTTCAGCGAAGGATAACATTCTGGAGTTGGTCCATGATTTTGTGAACCAGTTTTTGTCAGGAGGCTATAATGTTCTGATGCAGTCTATTTGTGAGGACATTGAAAAAGAACATCATGCAATTCAGAACAGCGATGTGGTTGTTTTCTTTCAGGTTTCTCAGTTCGTTACATCTTTCCAATATCACAAGTTCTTGATCTCTAAGCCAAATAGGGGAATGGATACATCTGAGACATTTGCCAATGAGTATGCTGATAGTACATTTTTCAAAGGCGATATATGTGGACCAATTGCAGCAACAATGAATGAGGCCATGTTTCTGCTTGTAGTTTTGAAGTGGCGTAATGCATTTGATGGCTTGAAGGAGACAAATGACTACAAGTTTCTGTCTGCAGCAGGGTCCCTTATGAAAAATATGATTCGCATGTTAGATTTAGTGCTTAAACTATCACTGGAAGATTCTAAAGAGCCTCAAACAGCTCGAATCCTTCTTTACAAGTTATTTTATGACCAGACTGATCAAGGGATGACTCATTTTCTCTTGAATCTGATCAAATCCTTCGACTCTCATAAACAACCCAAAAGTGATCTTGCAGATTTGGTCGAAATGATATATATAGTTGTACAGCTTATGGAGAATCTTCAGGCTCACGGAACATTAAGGGTACGTTATGTTTTCTTTTGTGGGCTAATCTTGAGTGGGGAATCTGTTAATTTGAGATTATTAAAGAAGAGAACATTGAGTGACAAGAATGAAAATGAAGGAGAACATGGAGATCATGGTGTCATTCAGAATGAAATTGGTGTCTCCAATTGTGGACAATCTGTAGATCTGAACATGTCGCAGAAAGAAAGCTTAGAAAATTCGATTTCTGATGGAAGACAAGAAGCCGTCATACAGATTGAGCCTGAAATACCTGTGCTTGGGACAGGAAACCTTGGAGGCAGTCTGCCACATATGGACGTCCAAAAGGCAAAAAATACTACTGATGATCTTCATTATGGAACTGATGATTCTTCGGGTGATGAGCAGGCAGCTGTGGTTGATGAAGTTGATTTTAAGGTGTCTACCTTGGTTTCTGCTTTTGCAAATAACCATGTTATCCAAAATTTATGTTGGTTGCTTAAGTTTTATAAGAGCAATTCAACCACGACAAATCACTACATTATATGCATTTTGCGGAAGATCTGTGATGATTTGGAGCTCTCTCCAATGCTATACCAGTTATCACTCCTCACCATATTCTACAATATCCTGTGTGAGCAGAAGTCATGTCCATGCAAGGATTATGAAAATATTGTTTGTTTCCTGACAAATTTGGTTAGAAAAATGCTAAGGAAAATGAAAAGTCAACCCCTTCTTTTTGTGGAAGTTCTCTTTTGGAAAACCCGTGGAGAATGCCATTACATCACTTCCCAATCTTTATTGCATGAACTTGGAAGTTTGAAGAAAGAAAGTGGAAAATGGGGAAATATTTCAAGGCATGGAGAAATTGGCTCAACAGAAGGCAAGGGATGGATGCACAGAAGTATAGCAGATGCTCTTGGGGAGGATGAAGCTGATGTTGTCATCTCTCATGAGCCTGTATATCAAAAAAATGATGATAATTTTAGTGAGGCGGAGGAAGGCGTCACTCCTATTTCAAGTAGCAAAATCGATGGGAAGACAAATTCTGATAATGTGGGGCATTATGCGGAACATGAGTCTGAAAGAGTTTCTAAAAGAAAGAGAAGGCTTGTTCTCAGTGCTGAGGTGGAGAAAAACATTAAGGATCTCTATGAGAAATTCAAAGATGATAGACATTGTAGCCGTCTCATTGCGGAAGCCCTTGATCCTGATTGTAAAGTTTCTCCAGTCCAAGTTTCCAATAAGCTTAAGCAGCTAGGTTTGAAAATTGCACCAAAGAAAAGGATGCTCCAAGTTGATGTACCTTTGTCTGATAGCACTAATCAACTAATGGAAGAAGCTAGAGCAGTTGGAGAAGAAAGTGCTCATCTTGTTTGCTCAAACAATTCAGAGGGAAGTTTAGTGAGGAAATCTTTGCATACAAGAAAAAGAGTACGTGCCTTCAGCAAAGATCAGGAGGAAACGATTAGAGCTTTATATGAACAGTTTAAAGGCCATAAAAGGTGCACCTACATGATTGCAAGTGCTCTGGCTGGTGATGATATTCTCACGGCTGCCCAAGTTTCCCGTAAACTTAAGCAACTTGGCTTACATGTTCCTCGACGGAAAAGAGCTGAAGGCAACATGCATTTGAGAGATGAGGATCTTAATGACTTTGATACAGCCAAAGCACAGGATTCTGATGATGAAACATTGTTGTCACTAAGAAAAAGGAGCAAGAAGGAGAATCACAGATTATTGCGTGAAGAGGTACCAGAACAGAATATTGAAGGAAAACTTATGCAAAGTTCCGATGATGAAACCCTAAGCTCTGTTCTGAAGAAAACTAGGAGACTCCCTCCAAAGTTGGATGAGAAGCGTACAAGCACTTCAAATGGGAGATTAGGGATTGATGATCCCTCTGGCAGTGTAGTTGCTAAAGATGTCACGAAAAGAATGCTGAAAACTATCATTCAAAAAATTTTGGAATTGCAACTTATTGTTGAGCCTGGTTTTTTCTTCTGTGTGGGGCCTAAACCTCTAAACTTTGATTCTTAG 3654 39.41 MDMEGLSVICAGLGSIDEDDGGNRIGYAKTDYCLDNLKDLLRFLRRDDPQSRSVFKQVCKWNTVSKDLIPIIEHCQDDRNLVLNAVKVLVFLTMPIEASSNDISQQIEYLWGLKSSITRSNTIAVVMSLLESPLENLECEAFTEDDWKLVQLVLTLFRNILAIQDISLQQKAGESASQFLSLRDRFLELLFNENVMDLILVITQNVGGSSKYFRQDNLLLLEIFHYIFMGQEPELLAKAHLNCSKVDGDTKTSLNGLKSIIEEEEEKRKLLRIRKLNRSSQFCGAFTRVTMDGSKTFFKGNPTFTSHDKFLKPQVPRGPLKKIVWDHGSLPSAKDNILELVHDFVNQFLSGGYNVLMQSICEDIEKEHHAIQNSDVVVFFQVSQFVTSFQYHKFLISKPNRGMDTSETFANEYADSTFFKGDICGPIAATMNEAMFLLVVLKWRNAFDGLKETNDYKFLSAAGSLMKNMIRMLDLVLKLSLEDSKEPQTARILLYKLFYDQTDQGMTHFLLNLIKSFDSHKQPKSDLADLVEMIYIVVQLMENLQAHGTLRVRYVFFCGLILSGESVNLRLLKKRTLSDKNENEGEHGDHGVIQNEIGVSNCGQSVDLNMSQKESLENSISDGRQEAVIQIEPEIPVLGTGNLGGSLPHMDVQKAKNTTDDLHYGTDDSSGDEQAAVVDEVDFKVSTLVSAFANNHVIQNLCWLLKFYKSNSTTTNHYIICILRKICDDLELSPMLYQLSLLTIFYNILCEQKSCPCKDYENIVCFLTNLVRKMLRKMKSQPLLFVEVLFWKTRGECHYITSQSLLHELGSLKKESGKWGNISRHGEIGSTEGKGWMHRSIADALGEDEADVVISHEPVYQKNDDNFSEAEEGVTPISSSKIDGKTNSDNVGHYAEHESERVSKRKRRLVLSAEVEKNIKDLYEKFKDDRHCSRLIAEALDPDCKVSPVQVSNKLKQLGLKIAPKKRMLQVDVPLSDSTNQLMEEARAVGEESAHLVCSNNSEGSLVRKSLHTRKRVRAFSKDQEETIRALYEQFKGHKRCTYMIASALAGDDILTAAQVSRKLKQLGLHVPRRKRAEGNMHLRDEDLNDFDTAKAQDSDDETLLSLRKRSKKENHRLLREEVPEQNIEGKLMQSSDDETLSSVLKKTRRLPPKLDEKRTSTSNGRLGIDDPSGSVVAKDVTKRMLKTIIQKILELQLIVEPGFFFCVGPKPLNFDS* 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19135126 19149867 - Vvi16g835 Vvi16g835 778484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g835 1217 Coils Coil 254 274 - -
Vvi16g835 1217 MobiDBLite consensus disorder prediction 1115 1171 - -
Vvi16g835 1217 MobiDBLite consensus disorder prediction 1142 1164 - -
Vvi16g835 1217 PANTHER TIMEOUT/TIMELESS-2 1 1155 IPR044998 -
Vvi16g835 1217 Pfam Timeless protein 27 286 IPR006906 -
Vvi16g835 1217 PANTHER PROTEIN TIMELESS HOMOLOG 1 1155 - -
Vvi16g835 1217 MobiDBLite consensus disorder prediction 874 897 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g835 K03155 TIMELESS; timeless - vvi:100246656 2253.79
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g835 . . . . . . . . . . . . . . . Cpe05g00623 . . . . . . . . . . . . . . . . . . . . . Chy09g01406 . . . . . . . . . . Cmo02g01116 . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01951
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011825 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 30