Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g836 ATGGCTCAGGTGGTGGCGACTCGCGCGATTCAGAGCTCGATTCTGTGCCCTAGCTCTGGATCCGTGCATGAGCGATTTGAGAAGCTGAAGCCCTCCGGTTTCGCTGCGAAAGTGTTGGCTCGCGAAGAGCGGAGGAGCCGGAGATTGGCTTGGAGGGGCGGTCCAATTGCGGCGGCGAAGAGATCTGTGGGAGCTGAGACGGAGGTTGTTCCGGTCACACCAGAGGATGCGAAGGGAGAGGAGCAATATCATCTTTTACGGGGAATTCAACAGCTTGGTGAGACATCTGTTGGTATGTGGTCTAAGCCAACGGTTAGACGCAAGACAAAGATTGTTTGCACAATTGGTCCATCCACCAACACACGGGAAATGATATGGAAGCTGGCTGAGGCTGGAATGAATGTCGCCCGCCTGAATATGTCTCATGGAGATCATGCATCTCATCAGAAGGTTATTGATTTGGTAAAAGAGTATAATGCACAATCCAAAGATAATGTCATTGCAATCATGCTTGATACCAAGGGCCCTGAGGTCAGGAGTGGGGACTTGCCCCAGCCAATCATGTTAAAAAGTGGGCAGGAATTCACCTTCACAATTCAAAGAGGCGTTGGGACAGCAGATTGTGTTAGTGTTAACTATGATGATTTTGTCAATGATGTAGAAATGGGCGACATGCTTCTCGTGGATGGTGGTATGATGTCATTAATGGTCAAGTCCAAGACTGGAGATTCAGTGAAATGTGAAGTTGTTGATGGTGGAGAACTCAAGTCTAGAAGGCATCTAAATGTTCGAGGAAAAAGTGCAACACTGCCATCAATTACTGAAAAGGACTGGGATGATATCAAGTTTGGTGTTGACAATAAAGTGGACTTTTATGCAGTCTCCTTTGTTAAAGATGCAAAAGTAGTCCATGAATTGAAGAACTATCTGAAAAGCTGTAATGCAGATATCCATGTCATTGTTAAAATTGAAAGTGCCGACTCCATTCCCAATCTACATTCAATTATTACCGCATCTGATGGGGCAATGGTTGCTAGAGGGGATCTTGGTGCCGAGCTTCCTATTGAGGAGGTCCCATTGCTACAGGAAGAGATAATCAGGATATGTCGTAGCATGGGAAAAGCTGTTATTGTAGCAACCAATATGCTGGAAAGCATGATTGTTCACCCAACACCAACCCGAGCAGAGGTATCAGACATTGCCATTGCTGTCCGAGAGGGTGCTGATGCAGTTATGCTTTCTGGAGAAACTGCTCATGGAAAGTTTCCCTTGAAAGCTGTGAAAGTCATGCATACAGTTTCCTTAAGAACTGAAGCAACCTTGGTCGGTAGCCCAATGCCACCAAATCTTGGTCAGGCTTTCAAGAACCATATGAGCGAAATGTTTGCTTTCCATGCAACCATGATGTCCAATACTCTCAGTACTTCAATAGTTGTTTTCACTAGAACTGGTTTCATGGCTATCCTTCTGAGCCATTATCGACCTTCTGGCACCATATTTGCCTTTACAAATGAGGAGAGAGTACAACAGAGACTAGCCGTGTACCAAGGGGTATGTCCCATATACATGCAGTTCTCAGACGATGCCGAAGAAACCTTTGCAAATGCCTTGACTTTGTTGCAGAAGCAAGGGATGGTGAAGGAAGGAGAAGAGGTGGCTCTTGTTCAGAGTGGCAGGCAGCCGATCTGGCGGTTCCAATCCACACACAATATCCAGGTCAGGAAAGTTTAA 1731 46.1 MAQVVATRAIQSSILCPSSGSVHERFEKLKPSGFAAKVLAREERRSRRLAWRGGPIAAAKRSVGAETEVVPVTPEDAKGEEQYHLLRGIQQLGETSVGMWSKPTVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVKEYNAQSKDNVIAIMLDTKGPEVRSGDLPQPIMLKSGQEFTFTIQRGVGTADCVSVNYDDFVNDVEMGDMLLVDGGMMSLMVKSKTGDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWDDIKFGVDNKVDFYAVSFVKDAKVVHELKNYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRICRSMGKAVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVSLRTEATLVGSPMPPNLGQAFKNHMSEMFAFHATMMSNTLSTSIVVFTRTGFMAILLSHYRPSGTIFAFTNEERVQQRLAVYQGVCPIYMQFSDDAEETFANALTLLQKQGMVKEGEEVALVQSGRQPIWRFQSTHNIQVRKV* 577
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19150697 19157465 + Vvi16g836 Vvi16g836 778485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g836 576 SUPERFAMILY PK beta-barrel domain-like 176 267 IPR011037 -
Vvi16g836 576 TIGRFAM pyruv_kin: pyruvate kinase 107 575 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 ProSitePatterns Pyruvate kinase active site signature. 317 329 IPR018209 GO:0004743|GO:0006096
Vvi16g836 576 Pfam Pyruvate kinase, barrel domain 107 441 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 Pfam Pyruvate kinase, alpha/beta domain 475 556 IPR015795 -
Vvi16g836 576 Gene3D - 177 270 IPR015806 GO:0004743|GO:0006096
Vvi16g836 576 PANTHER PLASTIDIAL PYRUVATE KINASE 2 37 576 - -
Vvi16g836 576 Gene3D - 449 576 IPR036918 -
Vvi16g836 576 PANTHER PYRUVATE KINASE 37 576 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 165 181 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 289 303 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 319 345 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 346 370 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 371 395 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 396 414 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 PRINTS Pyruvate kinase family signature 415 431 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Vvi16g836 576 SUPERFAMILY PK C-terminal domain-like 425 576 IPR036918 -
Vvi16g836 576 Gene3D - 109 433 IPR040442 -
Vvi16g836 576 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 94 440 IPR015813 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g836 K00873 PK, pyk; pyruvate kinase [EC:2.7.1.40] - vvi:100262029 1114.37
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g836 . . . Bda07g01913 Bpe03g00165 . . . Cmo16g00089 Cmo18g01319 . . Car02g00961 . Sed05g0275 . Cpe14g00069 Bhi01g01431 Tan01g0170 Cmetu04g2585 . Hepe07g0104 Mch10g0106 . . . . . . . . Cone1ag0946 Cone5ag0665 . . Lsi05g01173 . . Cme06g01059 . Blo09g00048 . . . . . . . . . Cma16g00086 Cma18g01290 Car16g00075 Car18g01207 Cpe09g00052 . . . . . . . . Cla05g00935 Cam05g1022 Cec05g1026 Cco05g1022 Clacu05g1011 Cmu05g0964 Cre05g1045 . Csa03g02178 Chy06g01277 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001502 3 1 2 2 2 2 4 2 2 2 2 2 3 3 2 4 2 4 4 2 2 2 2 2 2 2 2 3 3 2 72