Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g837 ATGCGCGTGTCTTCTCTTTTCCTTTATAAACGTTTCTCTCTCCTTCCCTCCCTTTGCTTTTGCCGGTACACTCGAAACCCTAGTTTTCTCCTCTCTCTCTCAACGACGCCGTTTTCGAAGTGCCTCTCTAGTCCTTGTAATCTGCCGTTTCTAAGGATGATTGAATTCCAGAGGGTTCTTGCACATCCAGGCATTTTTGGTGATCCAGTAGCTAGTTATCCTGCAGACACAGCCTTAAGACTTGATCTGCCAGGTGTTCCATATCCTTATCTCCTAAACTCAAAGGGAGCCAAGAGGAAATTCGACACAATTGATGGACCCAGGAGGTTGCAGGATGGCTCTTCCCTTGTTTTTGGATTAGGCCATTCATCGAGTTCCTCAGATAGCAAGGGGAGTTCAGCAACTGCTTGCACTACCATTTCCTCAATGAAAGAAACTGAGGATGACTTTTTGATGGATCTTAATCTAGACTTCAATCTCCATATTGGTAAGGAGAGGACCCTTAATCCAAAGAAGAATTTCCATTCAACCCCCAAGGGACTGGAAGTGGAAAAACCTAAGCTTGACCTTGTACTAAGTCTGTCAAGTGGGTATGCTGAATCTGATATTACCAGTGTTACCCCTGATTCTGGTCCATTTCAGAGTAACGTAGAGATGCCAGTCACACCTAGCACAGTTGAACTTGTTGATGAAGGATCGACATCACTTAGATGGAAAAGAAGGCATTTTCTGCCTCCATTGCATCCTCTGCAAAATACGGATACCGCTGCTGGTTTTATCCCTTGTGCTGTCCATACTGATCCAACTCCAGTTGCTCTGAGCCTTCCACCAACTGTGATAGTAATGCCTGAAAGTTCAGTGTCCTCTGCTCTTGAGACTACAAATGGACAACAGCAACGCAGCACTAGTGTAAAAACCTGTCAGGTTGAGGGATGCTGGAGAGGAGCAAGGGGTGCTTCTGGTCGTTGTATTGCCCATGGTGGTGGTCGTAGATGTCATAGAATTGGCTGTCAGAAGGGAGCTGAAGGCAAGACTGTATTCTGCAAAGCCCATGGGGGTGGGCGAAGATGCCAACATCTTGGGTGCACAAAGAGTGCTGAAGGCCGCACTGACCTCTGTATCGCCCATGGCGGTGGTCGCCGCTGCCAGTATCCAGAATGCACAAAAGGTGCTCAGGGGAGCACAATGTTCTGCAAAGCACATGGTGGGGGCAAAAGGTGCACAGCTCCAGGGTGCACAAAGGGTGCAGAAGGTAGTACACCATTCTGCAAGGGCCATGGAGGGGGGAAAAGGTGTACATTTCAAGGAGGTTGCACAAAGAGTGTGCATGGAGACGCTGCTCTTGGGGTGTGCCAGGATCAGGGTTTGGCGACCAAACTACCACTCCTTGGACCAAAACCTAGGATGACTGGAAAGATGAAAAATATCGTCACTTCTGAAAACGACAATGCTGGTCCAGTTCAAATTTCACTCCCAGAAGGCCGGGTTCATGGGGGAAGCCTTATGGCAATGCTTAGAGGTGGTATTGGTGGTGTCGGGGCGGCAAGCAGCAGTAATCAGGCTGTCTGTTGCCCATCGGTGCAAGGAAAATCATACACTCTGCCCCTTGGTTGGATGGCAAGTAGTGGTAACCAATCAGTTGGTGGTCCATCAGGAGGAGGAAAATCTTACCCTGTTCCCCATGGTTGGATGTAA 1695 48.55 MRVSSLFLYKRFSLLPSLCFCRYTRNPSFLLSLSTTPFSKCLSSPCNLPFLRMIEFQRVLAHPGIFGDPVASYPADTALRLDLPGVPYPYLLNSKGAKRKFDTIDGPRRLQDGSSLVFGLGHSSSSSDSKGSSATACTTISSMKETEDDFLMDLNLDFNLHIGKERTLNPKKNFHSTPKGLEVEKPKLDLVLSLSSGYAESDITSVTPDSGPFQSNVEMPVTPSTVELVDEGSTSLRWKRRHFLPPLHPLQNTDTAAGFIPCAVHTDPTPVALSLPPTVIVMPESSVSSALETTNGQQQRSTSVKTCQVEGCWRGARGASGRCIAHGGGRRCHRIGCQKGAEGKTVFCKAHGGGRRCQHLGCTKSAEGRTDLCIAHGGGRRCQYPECTKGAQGSTMFCKAHGGGKRCTAPGCTKGAEGSTPFCKGHGGGKRCTFQGGCTKSVHGDAALGVCQDQGLATKLPLLGPKPRMTGKMKNIVTSENDNAGPVQISLPEGRVHGGSLMAMLRGGIGGVGAASSSNQAVCCPSVQGKSYTLPLGWMASSGNQSVGGPSGGGKSYPVPHGWM* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19158251 19164166 - Vvi16g837 Vvi16g837 778486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g837 564 MobiDBLite consensus disorder prediction 543 564 - -
Vvi16g837 564 PANTHER EMB|CAB89363.1 372 450 - -
Vvi16g837 564 PANTHER EMB|CAB89363.1 480 520 - -
Vvi16g837 564 PANTHER EMB|CAB89363.1 69 382 - -
Vvi16g837 564 PANTHER F22C12.10 372 450 - -
Vvi16g837 564 PANTHER F22C12.10 480 520 - -
Vvi16g837 564 PANTHER F22C12.10 69 382 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g837 - - - vvi:100241527 671.003
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g69 Vvi16g837 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g837 . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00210 Cam01g0215 Cec01g0209 Cco01g0213 Clacu01g0210 Cmu01g0204 Cre09g2303 . . . . . Csa05g00227 Chy09g01273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01816
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003660 3 1 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 46