Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g839 ATGGCTAGAACCCCTCAATCCATACCTCTGCTCATCTCCCTCTCAGTCCTAGCTTTCCTCCAGACCTCTTATGCCGGTGGCATCGCCATCTACTGGGGCCAAAACGGCAATGAAGGGACCCTAACTCAAACCTGCAACACCGGCAAATACTCCTACGTTAACATAGCCTTCCTCAACAAGTTCGGCAATGGCCGGACCCCTGCAATCAACCTTGCAGGCCATTGCAACTCTGCTTCCAATGGCTGCACCTCCGTCAATAGGTTCCTGGGCCCTGCCCTTAACACTGGCCTATTTGACTATGTCTGGGTGCAATTCTATAACAATCCCCCATGCCAGTATACTACTGGCAACACCAATAAGCTTCTGAATTCATGGAACCGGTGGACTTCATCGATAAATTCACGGATCTTCTTGGGTTTGCCGGCATCCTCTGCAGCTGCCGGAAGTGGGTTTATTCCGGCCAATGTGTTGACCTCTCGAATTCTTCCGGTCATTAAGAGATCAGCCAAGTATGGAGGCGTGATGCTGTGGTCAAAGTACTATGATGATCAGAGTGGATACAGCTCTAGCATTAAGAGCAGGGTGTGA 588 50.34 MARTPQSIPLLISLSVLAFLQTSYAGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGRTPAINLAGHCNSASNGCTSVNRFLGPALNTGLFDYVWVQFYNNPPCQYTTGNTNKLLNSWNRWTSSINSRIFLGLPASSAAAGSGFIPANVLTSRILPVIKRSAKYGGVMLWSKYYDDQSGYSSSIKSRV* 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19171527 19172421 - Vvi16g839 Vvi16g839 778488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g839 195 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 195 IPR001223 GO:0005975
Vvi16g839 195 PANTHER ACIDIC ENDOCHITINASE 86 195 - -
Vvi16g839 195 PANTHER ACIDIC ENDOCHITINASE 1 86 - -
Vvi16g839 195 Gene3D Glycosidases 26 79 - -
Vvi16g839 195 SUPERFAMILY (Trans)glycosidases 25 192 IPR017853 -
Vvi16g839 195 Gene3D Glycosidases 80 195 - -
Vvi16g839 195 PANTHER ENDOCHITINASE 1 86 - -
Vvi16g839 195 PANTHER ENDOCHITINASE 86 195 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g839 K01183 E3.2.1.14; chitinase [EC:3.2.1.14] - vvi:100263797 224.557
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi15g788 Vvi16g839 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g839 . . . . . . . . . . Cma02g01094 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00083 Chy09g01408 . . . . . . . . . . . . . . . . . . Bhi12g00591 . . Lac11g0118 Hepe06g0757 . Lcy12g0093 . . . . . . . Lsi09g00054 . Chy06g01276 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025094 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2