Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g843 ATGTATGGGAAATGTGGTTGTTTGGTGGAGGCTTGTAGAGTTCTTGATCAAATGCCTTGTAGAGATGTTGTTTCATGGAATTCATTGGTTGCCGGTTTTTACATGAATAATTCTATGCCTGCTGAAGCGGTTGATATATTTTTACAGATGGAAGATCATGCGGTGGACCCTGATGCAATCAGTATTGCTAGTGTGCTTCCTGCTTGCGGGGATCTGTCAGCTCTATTGCTTGGAAGGAGGATTCATGAATACGTTGTTAGGAAGAGGCTTCAGCCAAATTTGCTATTGGAGAATGCCTTGATTGATATGTATGCCAAGTGTGGATGTTTAGAGTATGCAAGGGAAGTGTTTGATCAAATGAAGTTTCGTGATGTTGTGTCATGGACTTCAATGATCTCAGCTTATGGTATGAATGGGAAGGGCCGTGATGCTGTGTCTCTCTTCTCAAGGATGCAAGACTTGGGTCTGAATCCCGACTCCATTGCCTTTGTTTCAGTTCTCTCAGCTTGCAGCCATGCAGGATTATTGGATGAGGGCAGATACTACTTTAAATTAATGACTGAGGAGTGTAAGATATCCAAGCAGATCTATGAAGAGCTAGATTTCATAATTGTTGGGCGTGAAATCACTATCAGGGATACTAATCGTTTTCACCATTTCTACAATGGTGTTTGTTCATGTGGTGATTATTGGTGA 696 41.67 MYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGFYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKISKQIYEELDFIIVGREITIRDTNRFHHFYNGVCSCGDYW* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19205044 19206556 - Vvi16g843 Vvi16g843 778492

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g843 231 Pfam PPR repeat 2 22 IPR002885 -
Vvi16g843 231 Pfam PPR repeat 24 52 IPR002885 -
Vvi16g843 231 PANTHER OS03G0241800 PROTEIN 1 33 - -
Vvi16g843 231 PANTHER OS03G0241800 PROTEIN 33 196 - -
Vvi16g843 231 Pfam PPR repeat family 123 171 IPR002885 -
Vvi16g843 231 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Vvi16g843 231 PANTHER OS07G0578800 PROTEIN-RELATED 1 33 IPR045215 GO:0003723|GO:0009451
Vvi16g843 231 PANTHER OS07G0578800 PROTEIN-RELATED 33 196 IPR045215 GO:0003723|GO:0009451
Vvi16g843 231 Pfam DYW family of nucleic acid deaminases 204 231 IPR032867 GO:0008270
Vvi16g843 231 TIGRFAM PPR: pentatricopeptide repeat domain 126 160 IPR002885 -
Vvi16g843 231 TIGRFAM PPR: pentatricopeptide repeat domain 98 126 IPR002885 -
Vvi16g843 231 TIGRFAM PPR: pentatricopeptide repeat domain 162 189 IPR002885 -
Vvi16g843 231 Gene3D Tetratricopeptide repeat domain 1 74 IPR011990 GO:0005515
Vvi16g843 231 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 22 57 IPR002885 -
Vvi16g843 231 Gene3D Tetratricopeptide repeat domain 75 208 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g843 - - - vvi:100248393 330.102
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda15g00769 . Bpe12g00362 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011603 1 1 1 1 1 0 1 1 0 1 1 0 1 1 1 1 1 0 0 1 1 1 1 0 0 1 0 0 0 1 20