Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g846 ATGTTTTTTTGGTGGTTGAACCCTTTAATGAGAAAGGGTACCGAGAAGATTTTAGAAGAAGAAGATATACCTAAGTTGCGTGAGGTAGATCAAGCAAAAAACTGCTACTTGCAGTTCTTGGAGCAACTGCACAAACAGCAACAGAATCAGACATTGTCTCATGCATCAATCTTGAGGACAATTATTTCATGCCACTGGAAAGAGATTTTCATTTCTGGTTTCTTTGCACTGCTGAAGACACTCTCTCTGTTGACTGGTCCTCTACTTCTTAAGGCCTTTGTTGAGGTTGCAGAAGATCAAAAAAATTTTACATTTGAGGGCTGTGTGTTGGCCTTATCACTTTTCTTTGGGAAGACCATAGAATCCTTATCCGAAAGGCAGTGGTACTTTCGCAGCAGGATTACTGGTATGAGGGTAAGGTCTACTCTAACAGCAGTCATTTACAAGAAGCAACTGAGATTATCCAATGCTGCTAAAATGGTGCACTCACCAGGAGAAATAACAAACTATGTTACAGTAGATGCTTATAGAATTGGAGAATTCCCTTTCTGGTTTCATCAGACATGGACAACAATCCTTCAGCTCTGCGTAGCACTAGTGTTGAAATTATATGCCTGGGAAACCCACTTCGAGAATGTGATAGAAGCTTTAAGGAATGTCGAGCTCAAATGCCTGTCGAGGGTGCAGCTGCTAAAAGCATATTATTCATTCGTCTTCTATGCATCCCCTATACTGATCTCTGGTGCCACTTTCGGGGCATGCTATTTTCTTGGAGTTCCTCTATATGCTAGCAATGTTTTCACCTTTATAGCAACTCTACGGCTTGTTCAAGACCCTGTTAGATTTATCCCTGATGTTATTGGGGTGGTTATTCAAGCAAAAATTGCATTCTCACGGATTGTGCAGTTTCTTGAGGCACCTGAGTTGCACAGTGGGAATGTCCAGAAGAAGAATAGCATGGAGATTGTAGATCACTCTATTCTAATAAACTCGGCCAATTTTTCATGGGATGAGAGTCTATCAGAGCTGACACTAAGAAGCATCAACCTAGAGGTTAGACCTGGTGAAAAAGTCGCTATATGTGGAGAAGTCGGCTCAGGCAAGTCAACCCTTCTGGCGGCAATTCTAGGGGAGGTTCCTAATACTCAGGGAACTATACAAGTCCGTGGGAAGATTGCTTATGTTTCTCAGACAGCATGGATTCAGACAGGAACTATACAAGAGAATATTCTTTTTGGGTCTGAAATGGATACTCAAAGATACCATGAAGCACTTGAGAGTAGTTCATTGGTAAAGGACCTTGAGATGTTCCCCCATGGTGAACTCACTGAAATAGGTGAAAGAGGAGTTAATCTAAGTGGTGGGCAGAAGCAGCGGATTCAACTGGCTCGTGCACTCTACCAGGATGCCGATATATATCTCTTGGATGACCCATTCAGTGCAGTTGATGCACATACTGCAACGAGTCTACTGAATGAATATGTAATGAGAGCACTATCAGGGAAGACAGTCCTACTTGTGACCCACCAAGTTGATTTTCTTCCTGCTTTTGGTTCTGTTTTGTTAATGTCAGATGGGAAAATCCTACATGCAGCTCCTTATCATCAGCTATTGACGTCAAGCCAAGAATTTCAGGACTTCAGAACTCACATTGAGAGAGAATTTAATGCGTCTGGACATGATCAATTAATCAAGCAAGAAGAGAGAGAAATAGGAAACCCAGGTTTTAAGCCCTACATGCTGTATCTAAATCAAAATAAGCAATTCTGGCTCTTCCCCATAGGTCTCATTGTGGTTTACTTGTCAATTGGATGTACCTCAACAGTGTTCTTGCTCTGTAGAACTCTTTTGATGGTTTCCTTGGGCCTTCAATCATCAAAATCTCTATTAGCACAGCTATTAAACTCCTTTTTTCGGGCACCCATGTCTTTTTATGACTCCACACCTCTAGGAAGGATGATAAGTCGTGTTTCATCAGATTTGAATATCATCGATCTTGATCTCTTGTTTGGCATAGTCTATACTGTTTCAAGCACAGCAGCTGTTTGTGTCATTCTTGGAGTACTGGCTGCAGTCACCTGGCAAGTCCTATTGGTTTCCATACCTACAATTTATCTAGCAATGCGGTTACAGAAATACTACTACGCCTCTGCAAAAGAGATGATGCGGATCAATGGCACAACCAAGTCTTTGGTAGCAAACCATCTAGCTGAATCCGTAGCAGGAGCTATGGTAATAAGAGCATTTGAGCAAGAAGACAGATTTTTTGCAAAGATTCTGCACTTAATTGACACAAATGCCAGTCCATTCTTCCACGCTTTTGCAGCAAATGAGTGGTTGATTCAGTGGTTGGTGACGCTCTCTGCAACTATTCTCTCATCTTCTGCTCTCTGCATGGTTTTGCTTCCTAAAGGAACTTGTAGCCCTGGGTTCATTGGAATGGCTCTATCTTATGGGTTATCATTAAACTTGTCCCTGGTTAACAGTACTCGAAACATATGCACTCTAGAAAATTACATCATTTCTGTAGAGAGGCTTAACCAATACATGCATATACCAAGTGAAGCCCCTGAAGTGATACACAATAATCGTCCTCCACCCAATTGGCCTGATGTGGGTAAAGTTGAGATTCAGAAGTTGCAGATCAGGTATAGGCCCAACTTGCCACTAGTTCTTCGTGGGATCGATTGTATATTTGAAGGAGGGCACAAGATTGGTATTGTTGGCCGGACTGGCAGTGGGAAGACCACGCTCATAAGCGCTCTATTTCGCCTTGTGGAGCCAGCAGGAGGGAGGATTATAGTAGATGGCCTTGATATCTCTATGATTGGACTTCATGATCTACGTTCACGTTTTGGGATTATACCTCAAGATCCTACTCTTTTTAATGGGACTGTAAGATACAATTTGGATCCCTTGTCTCAGCATACCGAGCAAGAAATATGGGAGGTTCTTGCTAAGTGTCAACTTCAAGAGACCGTTCAGGATAAAGAAGAGGGCCTAGACTCCATGGTTGTAGAAGATGGATCAAATTGGAGCATGGGGCAAAGGCAATTGTTTTGTTTGGGACGTGCTCTATTGAGGAGGAGCCGAATACTGGTTCTTGATGAAGCAACAGCATCAATTGACAATGCAACTGACTTAATTCTACAGAAAACCATTCGGACTGAATTTGCAAATTGCACTGTGATCACAGTGGCTCACAGAATACCAACTGTGATGGATTGCACCATGGTTCTTGCAATCAGTGATGGAAAACTGGTAGAGTATGACAAGCCAACAGATTTGATGAAGAAAGAAGGATCCTTGTTTGGGCAGCTTGTCAAGGAATACTGCCTAAATTTCAGGGCCCTAAATTTATCAAGCTTACCTGAGTCAAAACCAGGGGAAAAAATCTGGAATTTTGTTGTATCCTGCATTATTTTCTTTCAGAATGTAATGAGAACAAAAGGAAATAAAGGGAAAAAAGGAACCGAGTACTAA 3483 41.92 MFFWWLNPLMRKGTEKILEEEDIPKLREVDQAKNCYLQFLEQLHKQQQNQTLSHASILRTIISCHWKEIFISGFFALLKTLSLLTGPLLLKAFVEVAEDQKNFTFEGCVLALSLFFGKTIESLSERQWYFRSRITGMRVRSTLTAVIYKKQLRLSNAAKMVHSPGEITNYVTVDAYRIGEFPFWFHQTWTTILQLCVALVLKLYAWETHFENVIEALRNVELKCLSRVQLLKAYYSFVFYASPILISGATFGACYFLGVPLYASNVFTFIATLRLVQDPVRFIPDVIGVVIQAKIAFSRIVQFLEAPELHSGNVQKKNSMEIVDHSILINSANFSWDESLSELTLRSINLEVRPGEKVAICGEVGSGKSTLLAAILGEVPNTQGTIQVRGKIAYVSQTAWIQTGTIQENILFGSEMDTQRYHEALESSSLVKDLEMFPHGELTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLLNEYVMRALSGKTVLLVTHQVDFLPAFGSVLLMSDGKILHAAPYHQLLTSSQEFQDFRTHIEREFNASGHDQLIKQEEREIGNPGFKPYMLYLNQNKQFWLFPIGLIVVYLSIGCTSTVFLLCRTLLMVSLGLQSSKSLLAQLLNSFFRAPMSFYDSTPLGRMISRVSSDLNIIDLDLLFGIVYTVSSTAAVCVILGVLAAVTWQVLLVSIPTIYLAMRLQKYYYASAKEMMRINGTTKSLVANHLAESVAGAMVIRAFEQEDRFFAKILHLIDTNASPFFHAFAANEWLIQWLVTLSATILSSSALCMVLLPKGTCSPGFIGMALSYGLSLNLSLVNSTRNICTLENYIISVERLNQYMHIPSEAPEVIHNNRPPPNWPDVGKVEIQKLQIRYRPNLPLVLRGIDCIFEGGHKIGIVGRTGSGKTTLISALFRLVEPAGGRIIVDGLDISMIGLHDLRSRFGIIPQDPTLFNGTVRYNLDPLSQHTEQEIWEVLAKCQLQETVQDKEEGLDSMVVEDGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFANCTVITVAHRIPTVMDCTMVLAISDGKLVEYDKPTDLMKKEGSLFGQLVKEYCLNFRALNLSSLPESKPGEKIWNFVVSCIIFFQNVMRTKGNKGKKGTEY* 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19218946 19224345 - Vvi16g846 Vvi16g846 778495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g846 1160 SUPERFAMILY ABC transporter transmembrane region 588 855 IPR036640 GO:0005524|GO:0016021
Vvi16g846 1160 SUPERFAMILY ABC transporter transmembrane region 58 305 IPR036640 GO:0005524|GO:0016021
Vvi16g846 1160 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 200 547 - -
Vvi16g846 1160 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 596 1117 - -
Vvi16g846 1160 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 553 594 - -
Vvi16g846 1160 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 201 - -
Vvi16g846 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 865 1102 IPR027417 -
Vvi16g846 1160 SMART AAA_5 901 1094 IPR003593 -
Vvi16g846 1160 SMART AAA_5 354 527 IPR003593 -
Vvi16g846 1160 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 877 1109 IPR003439 GO:0005524
Vvi16g846 1160 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 581 838 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g846 1160 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 329 550 IPR003439 GO:0005524
Vvi16g846 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 547 IPR027417 -
Vvi16g846 1160 Pfam ABC transporter transmembrane region 596 815 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g846 1160 Pfam ABC transporter transmembrane region 69 200 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g846 1160 Gene3D - 858 1110 IPR027417 -
Vvi16g846 1160 CDD ABC_6TM_ABCC_D2 596 850 IPR044726 GO:0140359
Vvi16g846 1160 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 202 292 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g846 1160 Gene3D ABC transporter type 1, transmembrane domain 54 200 IPR036640 GO:0005524|GO:0016021
Vvi16g846 1160 Gene3D ABC transporter type 1, transmembrane domain 566 856 IPR036640 GO:0005524|GO:0016021
Vvi16g846 1160 CDD ABCC_MRP_domain2 873 1093 - -
Vvi16g846 1160 ProSitePatterns ABC transporters family signature. 452 466 IPR017871 GO:0005524
Vvi16g846 1160 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 70 201 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g846 1160 CDD ABCC_MRP_domain1 327 527 - -
Vvi16g846 1160 Gene3D ABC transporter type 1, transmembrane domain 201 301 IPR036640 GO:0005524|GO:0016021
Vvi16g846 1160 CDD ABC_6TM_ABCC_D1 96 300 IPR044746 GO:0140359
Vvi16g846 1160 Gene3D - 302 565 IPR027417 -
Vvi16g846 1160 Pfam ABC transporter 893 1040 IPR003439 GO:0005524
Vvi16g846 1160 Pfam ABC transporter 345 479 IPR003439 GO:0005524
Vvi16g846 1160 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 200 547 - -
Vvi16g846 1160 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 553 594 - -
Vvi16g846 1160 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 596 1117 - -
Vvi16g846 1160 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 2 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g846 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - vvi:100260363 1740.32
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi2g84 Vvi16g846 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g846 . . . Bda07g01915 Bpe03g00167 . . . Cmo16g00086 Cmo18g01320 . . . . . . Cpe14g00066 Bhi01g01434 . . . Hepe07g0101 Mch10g0103 . . . . . . . . Cone1ag0952 Cone5ag0661 . . Lsi05g01169 . . Cme06g01064 . Blo09g00046 . . . . . . . . . Cma16g00082 Cma18g01291 Car16g00072 Car18g01208 Cpe09g00051 . . . . . . . . Cla05g00937 Cam05g1026 Cec05g1030 Cco05g1026 Clacu05g1015 Cmu05g0968 Cre05g1049 . Csa03g02180 Chy06g01273 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48