Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g849 ATGAAAACAACAAGTCCTCTGTTTGTTTGCCAAGAAAGTAAGATGGAGAGGAAGCAATGGAAGAAGGCTGAAACTGCACCCAAAGATTTGATGGGTTTGGTATTTTCTTGGTCTCTGAAAGATATACTCAACAAAAATCTTTACAAAAACAAGGTGAAAATGATCCCTGATACGTTCTTGTCTGTGTCTCATTACTTGACATCATTCATTTACCCGCTTATCGAGGAAACGCATGCTGATTTATTGTCAAGCATGACAATGGTTTCTCAAGCTCCCCTATGTGAAATACTCTCTGTTGAAACAACTAAAGATTATGAACCTCCCACAAACTTGAAGTACAAGATTACACTGAAGGTAATAAGGAATAATGGAAATGATGCAGAAATATATGAACCTGAGACTGGGGATCTGATTGCATTGACAGATGTAAGACCAAAATGCATCAGTGATTTAAACAGGCCTAAGATATCTTATACTGTTGCTTCACCCATTGAGTTTGAGCAAAACATGGAGACAAATAAGAAGAGGAAAACTCTTTTTGCTGTTTTCCTAATAAATATGATAACTAATAATCGTATATGGGCAGCATTGAATATAGGTCCAGACCTGGGCAACAAGAGTATTATTCAGAAAGTGCTGCAACCTGATTCCTTGGCTGGGGAAGAATGTGCCCTCTGCAGCTCTGATTCAGTATCAAACTCGGAGCCCATGGTCAGTTCTTTTGATCTAAATGACTCTCAAAAGGCTGCAGTGCTAAGCTGTATCGCTGCAAGGGAGTGTCATCATCAGAATAGTATCAAACAAATATGGGGGCCTCCTGGGACTGGGAAAACAAAGACGGTTGCTACATTACTATTTGCACTCTATAGGATGAAATGCAGAACAGTAACATGTGCTCCTACTAATATTGCAGTGTTAACAGTTACAGAGAGGCTGGTGGGTTTGGTTAGAGATTCAAATGAATATGGCACTTATGGACTGGGAGATATACTTCTATTTGGGAATGGTAAGCGAATGAAGATTGATGATCATCGTGACCTACACGATGTCTTTCTTGATTTCCGTGTTAAAATTCTAGCAAACTGTTTTTCCCCACGTTCTGGGTGGAAGCATTCTTTAGAATCTATGATATGTTTGCTTGAAGACCCTAAGGAAATGTATTCTACCTACTTGAGAGAGAGGATGAACCAGGGAAAGGGAAAAGGGAAAGGGAAAAAACAGCAAGACAAGAATAGCGAAGGAGCAACTGATGGAAGTTCTCACAGATTGCTAGAATCTTTCATAACTTTGTTCCAAAATGTTTCTGTTGAAAGTAAAGGGTTGAAGGAAACCAGAAGAAAGTTCCTTGAAATACTCAGATGCCTTCGCCAAGCAATTGAAGTTCCAAATACTACTGATCATTATCGGATCAAAAGTTTTTGTTTACAGAATGCGACCTTGCTTTTCTGCACTGCATCAAGCTCAGCAAAAATTCCAGTAGGTGGGAAACCCATTGAATTGTTGGTTATTGATGAAGCTGCTCAGCTAAAGGAATGTGAGTCAGCCATCCCTCTACAAATTTCCGGTATCCGCCATGCCATTCTCATAGGGGATGAGTTGCAACTACCGGCAATGGTTAAGAGCAAGATTTCTGAGGAGGCCAAATTTGGAAGAAGTTTGTTCCAGAGGCTGGTATTGTTAGGACACAGAAAGCACCTTCTCAATCTCCAGTACAGAATGCATCCATCCATAAGCTTGTTTCCAAATAGAGAGTTCTATGACAATCTGATTTTGGATGCTCCCAATGTCAAGGAGAGAAAATATGAAAGGTCTTACCTGCATGGAAACATGTATGGTAGCTACTCCTTTATAAACGTAGCCTATGGAAAAGAGGAATTTGATTACAGGTATAGCACAAGAAACATGGTGGAGGTAGTTGTGGTCTCTGAGATGGTTGCAACCCTTGCTAAAGCAACCAAGGGCAGGAAACAGAGGGTAAGTGTTGGTATCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGATAGACTGGGAAAGAAATACACATCAAGTGCAGATGGTAAATTCTCTGTGAGTGTTCGTTCTGTTGATGGGTTTCAAGGGGGTGAGGAGGATATCATTATTATCTCCACTGTCAGATGTAATTTGAAAGGTTCAGTGGGATTCATTTCTAATCGTCAACGCACAAATGTGGCTCTAACCCGAGCAAGGTATTGCCTTTGGATATTTGGAAATGGTCCAACTCTAGAACACAGTGGTACTGTTTGGGGGAAACTAGTCAATGATGCCAAAGATCGGGGGTGTTTCCATAATGCTGAAGAGGACAATAACTTAGCTCGGGCTATCACTACATCCTTGGTTGAACTTGGCGAGCTTCATCTTTTACAGAAGCAAGATTCATTACTCTTCAGGAAGGCAAGATGGAAGGTTCACTTCTCAGATGATTTTTGGAAATCCATGGTAAGAATTAAGAGTGTCGAGATTCATAACAAGGTGTTTTGTCTATTGGAGAAGCTTTCAAGTGGTTGGCGTCGACCCGACAATGAGGCAAACCCTAACACCATCAATGGGACTTGTTTGCAACTGTTGGAGCTGTACAAGGTCACTAAAATACTCAATCTAGTTTGGAGTGTAGAGATTCTCAAGGAAGATTCAAACTACATCCAGGTTTTGAAGGTTTGGGACATTTTGCCAATGGAAAGAACACCAAAACAAGCAGCGCGTCTAGAGAACTTGTTTGGGAACAAACGAGTGATTGATATGGACCACTGCAAATTCAAATGTGTAGAAGGGAATCTTGAAGTTCCTATGACATGGCCAGCGGATGATGAACCAGAACAGTCGTTGAGTTCATTTAAATCACTCAGTCTTCAGAGTTGA 2883 40.69 MKTTSPLFVCQESKMERKQWKKAETAPKDLMGLVFSWSLKDILNKNLYKNKVKMIPDTFLSVSHYLTSFIYPLIEETHADLLSSMTMVSQAPLCEILSVETTKDYEPPTNLKYKITLKVIRNNGNDAEIYEPETGDLIALTDVRPKCISDLNRPKISYTVASPIEFEQNMETNKKRKTLFAVFLINMITNNRIWAALNIGPDLGNKSIIQKVLQPDSLAGEECALCSSDSVSNSEPMVSSFDLNDSQKAAVLSCIAARECHHQNSIKQIWGPPGTGKTKTVATLLFALYRMKCRTVTCAPTNIAVLTVTERLVGLVRDSNEYGTYGLGDILLFGNGKRMKIDDHRDLHDVFLDFRVKILANCFSPRSGWKHSLESMICLLEDPKEMYSTYLRERMNQGKGKGKGKKQQDKNSEGATDGSSHRLLESFITLFQNVSVESKGLKETRRKFLEILRCLRQAIEVPNTTDHYRIKSFCLQNATLLFCTASSSAKIPVGGKPIELLVIDEAAQLKECESAIPLQISGIRHAILIGDELQLPAMVKSKISEEAKFGRSLFQRLVLLGHRKHLLNLQYRMHPSISLFPNREFYDNLILDAPNVKERKYERSYLHGNMYGSYSFINVAYGKEEFDYRYSTRNMVEVVVVSEMVATLAKATKGRKQRVSVGIISPYKAQVYAIQDRLGKKYTSSADGKFSVSVRSVDGFQGGEEDIIIISTVRCNLKGSVGFISNRQRTNVALTRARYCLWIFGNGPTLEHSGTVWGKLVNDAKDRGCFHNAEEDNNLARAITTSLVELGELHLLQKQDSLLFRKARWKVHFSDDFWKSMVRIKSVEIHNKVFCLLEKLSSGWRRPDNEANPNTINGTCLQLLELYKVTKILNLVWSVEILKEDSNYIQVLKVWDILPMERTPKQAARLENLFGNKRVIDMDHCKFKCVEGNLEVPMTWPADDEPEQSLSSFKSLSLQS* 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19240224 19246621 - Vvi16g849 Vvi16g849 778498

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g849 960 Gene3D - 162 570 IPR027417 -
Vvi16g849 960 MobiDBLite consensus disorder prediction 945 960 - -
Vvi16g849 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 754 IPR027417 -
Vvi16g849 960 PANTHER DNA2/NAM7 HELICASE FAMILY 422 954 IPR045055 -
Vvi16g849 960 PANTHER DNA2/NAM7 HELICASE FAMILY 20 394 IPR045055 -
Vvi16g849 960 Pfam AAA domain 550 746 IPR041679 -
Vvi16g849 960 Gene3D - 571 785 IPR027417 -
Vvi16g849 960 MobiDBLite consensus disorder prediction 940 960 - -
Vvi16g849 960 CDD SF1_C_Upf1 573 765 IPR041679 -
Vvi16g849 960 MobiDBLite consensus disorder prediction 396 419 - -
Vvi16g849 960 Pfam AAA domain 243 542 IPR041677 GO:0004386
Vvi16g849 960 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 20 394 - -
Vvi16g849 960 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 422 954 - -
Vvi16g849 960 MobiDBLite consensus disorder prediction 396 416 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g849 - - - vvi:100244982 1791.16
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35