Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g851 ATGAGGAGGGTGAATGTGAGGAGAGTAACAGGCACTGGAGGAAACTTGACAGATGTGGTGTTCTCTTGGTCTCTGGATAATGTCCTCGATGAAAACTTTTACAAGAGACAGGTGGGAAAGATACCAATGGAATTCTTGTCGAAGCCTGTTTACATGACATCGTTCATTCCCGCACTTCTTGAGGAAATACGTGCTGATTTGTTGTCAAGCATGAAAACAGTATTTGAGGACCATGCAAGTGATCCACCTGTGCGTGAAGTACAGTTTGTTGAAGAATCTACACGATATGGTCCTCCAAAAAACTTGTATAATATTTCACTGAAAGGTGAGAGAGTTGCAGAAAATGATGCTGTAACATATAAGCCTGAGAACGGAGACATTATCGCACTGACAGATACGAGACCAAATAGTATTGATGATTCAAAGAGGTCTGAAAGATCTTATCTTATTGCTTTCATTCAAGGATCAAGAAAAGACTCAGATGAATTTCAAATTGTGTCATCGAAGCCCATTGAATTTGAACAAAACATGCAGGAGGATGGGAAGAGAAATACCCTTTATGCTGTTTTTCTAATAAATTTGACAACAAATATTTGCATATGGAATTCATTGACCCAGGGTCTTCAAGGGGGCAGCATGGCAATCATTGAAAAAGTGCTGCGACCTAATTCCTATGCTGGGGGTAGATGTAAAATCTGCTCCTCTGGTTCTGTATCAGATTCAGTGGCCAGAATTAATTCTTTTAAGCTAAACAGGTCCCAAAAAGCAGCTGTTTTAAGCTGTCTTGCTACAGCAAACTGTCATCATCAGAACAGTGTGGAACTAATAAAAGGCCCTCCTGGGACAGGGAAAACAAATACGGTTGGTTCATTATTGTGTGCACTCTTAGGGATGAAATGCAGAACGCTTGCTTGTGCCCCAACTAATATTGCTGTATTAGAAGTTGCAGCACGGGTTTTGAGCTTAGTTGAAGAGTCACTTGAATATGATGCTTATGGACTGGGAGATATTGTTCTTTTCGGGAGTAGTGAGGGTATGAATATTGATGATGATAGCGATCTTCATGATGTCTTTCTTGACACCCGTGCTAGGATTCTAGTACGGTGTTTTGCTCGACATTCTGGGTGGAAACACTGTTTAGAGTCTATGATAAATTTGCTTGAAGGAACTAAGGAAGACCATGAGAAACTAGAAATCTGTAAGGAAAGAGAGGAGGTTCAATACTTCGAAGATCCGAAGAGCAAGAAAATTTGGAAGATGGTTGAGGACAAGGGTGAACTTACTCAAAACAAAAATAACAGAGTGGCTACTGAAGAGTGCCTTCAAAGTCTCAAATGCCTTTGTAAAAAAATCACTCTTCCAAATTTTTATACAGATGATAAAATCAAAAAGTTTTGTTTGGAAAAGGCTTGTTTGCTTTTCTGCACTGCTTCAAGCTCAGTTAAATTGAAGATGAAGGGAATGACACCAGTTGAATTGTTGGTTATAGATGAAGCCGCTCAGCTAAAGGAATGTGAATCAACCATTCCTTTACAAATTTCTGGTCTGCGCCACGCTATTCTAGTGGGGGATGAGATGCAACTACCAGCATTAGTCAAGAGCAAGATTTCAGAGAAGGCGGGATTTGGAAGAAGTTTGTTTGAGAGGCTGGTATTGTTAAAGCATGAGTACCACCTTCTCAATATCCAGTATCGGATGCATCCGTCAATAAGTTTTTTTCCAAATAAGGAGTTCTACGAGAATCAGATTTCTGATGCTCCAAATGTTAAAGATAGAAGCTACGAGAAGCAGTTTCTTCAAGGAAGCATGTATGGGCCATACTCTTTTGTGAATGTAGCATATGGAAAAGAGGAATTTGAAAACCATAGCTCAAGAAACATGGTGGAGGTTGCTGTTGTATCTGAGGTAGTTACAAGTCTTTTTAAAGAATCTGTCTCCAAGAAACAGAAGGTTAGTGTTGGTGTGATATCACCCTACAAAGCTCAAGTTATAGCAATTCAGGAAAAACTTGGAAAGATATACAATACAGATGAAGAACGTGACTTCTCTGTCAAAGTTTGCACGGTTGATGGGTTTCAAGGCGGTGAAGAGGATGTTATTATTATCTCAACTGTCAGAGGTAATGAGAAGGGCTTAGTGGGTTTCCTTTCCAAACGTCAAAGAGCAAATGTGTCTCTTACACGAGCAAGGCATTGCCTCTGGATATTCGGGGAAAGTGAAACTCTAGTAGCAAGTGGCACTGTTTGGAAGAGAGTTGTGGAGGATGCCAAAGAGCGAGGGTGTTTCTATAATGCTAGTGCGGAAAAGAACCTGGCTCAGGCTATGGCTATATCCCTGGTTGAGCAAGGCCAACTTGATGATTTACATGATATAGCTTCTCTACTATTCGGGAAGGCAAGATGGAAAGTTTTCTTCAGTGACGAGTTCTGGGAATCCATGGTCAGCATCTTCAACACCGAGGTTCACAAGGAAGTGGTTTCTCTGTTAGAGAAGCTCTCAAGGGGTTGGCGTCTCAAAGACAGAAACTTCTATACCATACATGGGAATCTTTTGGTCCAGTACAATGTAATCGGGCAGTTCAATCTACTGTGGTCTGTAGACATCCTTGAGGATGACTCATATTGCATCCAGATTCTGAAGGTTTGTGATATCGTGTCATTTCGTGAAACATCAAGAGCAGTGAAGCAGCTTTGTTCCTTATTTGAAAATTACACAGACGACCGCATCCAACGCTGCAAATTCAAACGTTTAGAAGGGAAGCTTGAAATGATCAATTGGAAGAATATGCTTACAACTGAAAGATTTAAGAGGATGGAGTTGGGAAGACAGCTTTTGGTTATGGCATACTGGAACAAATTTCCTATACACTAG 2871 40.61 MRRVNVRRVTGTGGNLTDVVFSWSLDNVLDENFYKRQVGKIPMEFLSKPVYMTSFIPALLEEIRADLLSSMKTVFEDHASDPPVREVQFVEESTRYGPPKNLYNISLKGERVAENDAVTYKPENGDIIALTDTRPNSIDDSKRSERSYLIAFIQGSRKDSDEFQIVSSKPIEFEQNMQEDGKRNTLYAVFLINLTTNICIWNSLTQGLQGGSMAIIEKVLRPNSYAGGRCKICSSGSVSDSVARINSFKLNRSQKAAVLSCLATANCHHQNSVELIKGPPGTGKTNTVGSLLCALLGMKCRTLACAPTNIAVLEVAARVLSLVEESLEYDAYGLGDIVLFGSSEGMNIDDDSDLHDVFLDTRARILVRCFARHSGWKHCLESMINLLEGTKEDHEKLEICKEREEVQYFEDPKSKKIWKMVEDKGELTQNKNNRVATEECLQSLKCLCKKITLPNFYTDDKIKKFCLEKACLLFCTASSSVKLKMKGMTPVELLVIDEAAQLKECESTIPLQISGLRHAILVGDEMQLPALVKSKISEKAGFGRSLFERLVLLKHEYHLLNIQYRMHPSISFFPNKEFYENQISDAPNVKDRSYEKQFLQGSMYGPYSFVNVAYGKEEFENHSSRNMVEVAVVSEVVTSLFKESVSKKQKVSVGVISPYKAQVIAIQEKLGKIYNTDEERDFSVKVCTVDGFQGGEEDVIIISTVRGNEKGLVGFLSKRQRANVSLTRARHCLWIFGESETLVASGTVWKRVVEDAKERGCFYNASAEKNLAQAMAISLVEQGQLDDLHDIASLLFGKARWKVFFSDEFWESMVSIFNTEVHKEVVSLLEKLSRGWRLKDRNFYTIHGNLLVQYNVIGQFNLLWSVDILEDDSYCIQILKVCDIVSFRETSRAVKQLCSLFENYTDDRIQRCKFKRLEGKLEMINWKNMLTTERFKRMELGRQLLVMAYWNKFPIH* 957
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19252973 19259256 - Vvi16g851 Vvi16g851 778500

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g851 956 PANTHER DNA2/NAM7 HELICASE FAMILY 13 396 IPR045055 -
Vvi16g851 956 PANTHER DNA2/NAM7 HELICASE FAMILY 424 926 IPR045055 -
Vvi16g851 956 Gene3D - 565 777 IPR027417 -
Vvi16g851 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 248 736 IPR027417 -
Vvi16g851 956 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 424 926 - -
Vvi16g851 956 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 13 396 - -
Vvi16g851 956 Pfam Domain of unknown function (DUF6469) 83 205 IPR045529 -
Vvi16g851 956 Pfam AAA domain 249 535 IPR041677 GO:0004386
Vvi16g851 956 Gene3D - 216 563 IPR027417 -
Vvi16g851 956 CDD SF1_C_Upf1 566 757 IPR041679 -
Vvi16g851 956 Pfam AAA domain 543 739 IPR041679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g851 - - K10706 vvi:100262126 956.822
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g851 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35