Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g852 ATGGAGAAGCAATATGGAAGGAAACCCAAAAGTACAGGCCTAATAGATCACGTCTTCTCTTGGTCTCTCAATGATGTACAAAACCAAGCTCTTTACAAAGACAAGGTGAGTCCAATCCCAGATAAATTCTCTTCAAGGCGGCATTACATGGGATCATTCATTGTTTCGCTCATAGAGGAAACCCGTGCTGATTTGTCTTCAAGCATTAGAACAGCTTGTGAAGCATCTGAGTCTGAGTCTGAGTCCAGTACATGGGAGCCAACTTCAGTGGATACAGCTGCTAGAGAACTGATGTCTATTGAAAAATCCTCACAATTCAAGCTTCCCAGATACTTTCTATATGATGTTTCACTGAAGAGCGTAGAAGGTAATGGAAATAATGCGGAAGTGTATGAGCCTCAGGCAGGAGACATCATTGCATTAACAGATAAAATACCATACTACATCGAGTCAGAAAGTTGTTACAATATCGCTTTAGTTACAGGATCTTATGGAAAAACCTCTGATAAGCTCCAAATACAGTCGCCAAAGCCCATGATGCATGAACAAATCATGTCGGATAATAAGAAGAGACGAACTATTTATGCGGTATATTTGATAAATATTACTACAAATAATTGTATATGGGAGGCATTGCACCGGAGTCCTCATGGGGGAAACATCAGAATTATCGACAAAGTTCTGCAAACTGACTCCTCAGCTGGGAGAGGATGTGCTTTGTGTTCCTCTGGTTCAGAGGCCTTCAAATCTGTAACAGATTTGGAGGACAGGATTCGATCTTTCGGTCTAAATCTTTCCCAAGAAGAAGCTGTTTTAAGCTGTATTTCTGCAGCCATGTGTCATCATGAGAATAGTGTAAAACTGATAAAGGGTCCTCCTGGAACGGGGAAGACGAAGACCGTCGCCTCGTTATTATTTGCTGTCTTGAAGATGAAATGCAGGACTCTTGCTTGTGCCCCAACTAATACTGCAGTTTTACTAGCGACGGAGAGGCTGTTGAGCTTTGTTAAAGGGTCTCTTGAGAATGGTACTTATGGGATGGGAGATATTGTTCTTTTTGGGAGTACTAGGGGAATGCAGATTGATGATTGTGACGATGAACTTCACGATATCTTTCTTGATTCCCGTGCTAATATCCTAGCCCGGTGTTTCGCTCAAGGTTCCGGGTGGAAACACAGCTTAGAATCCATGATAACTTTGCTGCAAAACCTTGAAGGAAACTACAATTTATGCTTGGGGAACAGAGAAGATGAAGGCAATGAGGAACAGGGGAAACAGGGGAAGCTGGGGAAGGGAATTTTCATAGATGAGAAGGAAGAAATCGATAAAAAAAATTTTCAAAGCTTGAAATTCAATGTGATGAAAAATATGGTCAGAGCTCTGAATTTGCTGAAAAATCTATCAGATTTGAGAACAGAAGTCTGCCTTCAAACACTCAGAAGCCTTGGCAAAATGTTCTCTGTTCCAACTCTTGCTAATGAATACAAAATCAAAAGTTTATGTTTGAAAAACGCCGTCTTGATTTTCTGCACTGTTTCGAGCTCATCCAAATTACTGCACATCAAAGATATGAAAGGCATTGAATTGCTGGTTATTGATGAAGCTGCTCAGCTGAAAGAATGTGAGTCCACCATTCCTTTACAAATTTCTGGAATCCGCCATGCAGTTCTAGTAGGAGACGAGATGCAACTACCGGCATTGGTTAAAAGCAAGGAGTTGGAGAATACCAAATTCGAAAGAAGTTTGTTCGAGAGATTAGTATCGTTAAGACACTACAAGCACCTTCTTGACGTCCAATACAGAATGCATCCATCCATAAGCCTTTTTCCCAATAACGAGTTCTATGAAGGTGATATCATCAATGCTCCAAAAGTGAAAGAAGCTATCTACAGTAGGCGCTTCCTCCATGGAAACATGTATGGGCCATTCTCTTTTATAAATGTAGCTTCCACAGTGCCAGAACTTGAGGAATTCAATGTAAGACATAGCTCAAAAAACATGGTGGAGGTAGCTGTGGTCTCTCAGATCATTGCAAGCCTCTTTGAAGAAACCAAAGCCAGAAAAGAGAAAGTTAGTGTTGGTATCATATCACCATACAAGGCTCAAGTTCATGAAATTCAGAAAAAACTTGGGAAGGCATATAGCACAGATGCAGAGAGTCAATTCTCTATCAAAGTTTCTACTGTTGATGGATTTCAAGGTGATGAAGAGGATGTGATTATTATCTCCACTGTCAGATGTAACAGCGGAGGCCACATCGGTTTTGTCAAAAATTATAGAAGAGCAAATGTGTCTCTTACCCGAGCAAGGCATTGCCTTTGGATAACAGGAAATGCCAAGACTTTAGAGGACAGTCACTCCGTTTGGGAAAAAGTAGTCCAGCATGCTAAAGGGCAGAGGTGTTTCTATAACGCTTATGAGGATACCAACCTGGCCAAGGCTCTCATTGTCTGCTTCCTTGAGCGTTACCATCTTGATGGTGTACACTATATGGCTTCTCAACTCTTCAGGAACACAAGATGGAAGGTCTTTTTTGATGACAAGTTTTGGGAATCCATGGCCAAGATTATGAACACCGCGGTTCACAAGGAAGTACTTTCTCTGCTAGAGAAGCTCTCAAGTGGTTGGCGTCCCAAAGTCAGAAACCCATATGCCATCAATGGGACTCATTTGATGCAGTACATTATCAAAAGGCAGTTCCATCTCCTTTGGGCAGTAGACATTGTGGAGGAGAATTCATGTTACATCCAGGTTTTGAAGGTTTATAACATTGTGCCATCTCATGAGACAACAGGAGTAACACGGGACCTTTGTGCTTCATTTGAGAAATTCACCATTGACCATATCAACCGCTGCAAATATACAAGTGGACAAGGGGAAGCTCCTATGATATGGCAGATGCCTTCTAAGGGTCTCTATCGAGGATTTCATTAG 2934 41.48 MEKQYGRKPKSTGLIDHVFSWSLNDVQNQALYKDKVSPIPDKFSSRRHYMGSFIVSLIEETRADLSSSIRTACEASESESESSTWEPTSVDTAARELMSIEKSSQFKLPRYFLYDVSLKSVEGNGNNAEVYEPQAGDIIALTDKIPYYIESESCYNIALVTGSYGKTSDKLQIQSPKPMMHEQIMSDNKKRRTIYAVYLINITTNNCIWEALHRSPHGGNIRIIDKVLQTDSSAGRGCALCSSGSEAFKSVTDLEDRIRSFGLNLSQEEAVLSCISAAMCHHENSVKLIKGPPGTGKTKTVASLLFAVLKMKCRTLACAPTNTAVLLATERLLSFVKGSLENGTYGMGDIVLFGSTRGMQIDDCDDELHDIFLDSRANILARCFAQGSGWKHSLESMITLLQNLEGNYNLCLGNREDEGNEEQGKQGKLGKGIFIDEKEEIDKKNFQSLKFNVMKNMVRALNLLKNLSDLRTEVCLQTLRSLGKMFSVPTLANEYKIKSLCLKNAVLIFCTVSSSSKLLHIKDMKGIELLVIDEAAQLKECESTIPLQISGIRHAVLVGDEMQLPALVKSKELENTKFERSLFERLVSLRHYKHLLDVQYRMHPSISLFPNNEFYEGDIINAPKVKEAIYSRRFLHGNMYGPFSFINVASTVPELEEFNVRHSSKNMVEVAVVSQIIASLFEETKARKEKVSVGIISPYKAQVHEIQKKLGKAYSTDAESQFSIKVSTVDGFQGDEEDVIIISTVRCNSGGHIGFVKNYRRANVSLTRARHCLWITGNAKTLEDSHSVWEKVVQHAKGQRCFYNAYEDTNLAKALIVCFLERYHLDGVHYMASQLFRNTRWKVFFDDKFWESMAKIMNTAVHKEVLSLLEKLSSGWRPKVRNPYAINGTHLMQYIIKRQFHLLWAVDIVEENSCYIQVLKVYNIVPSHETTGVTRDLCASFEKFTIDHINRCKYTSGQGEAPMIWQMPSKGLYRGFH* 978
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19262280 19270069 - Vvi16g852 Vvi16g852 778501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g852 977 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 451 970 - -
Vvi16g852 977 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 8 414 - -
Vvi16g852 977 PANTHER DNA2/NAM7 HELICASE FAMILY 8 414 IPR045055 -
Vvi16g852 977 PANTHER DNA2/NAM7 HELICASE FAMILY 451 970 IPR045055 -
Vvi16g852 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 786 IPR027417 -
Vvi16g852 977 CDD SF1_C_Upf1 602 797 IPR041679 -
Vvi16g852 977 Gene3D - 199 599 IPR027417 -
Vvi16g852 977 Pfam Domain of unknown function (DUF6469) 113 215 IPR045529 -
Vvi16g852 977 Pfam AAA domain 263 571 IPR041677 GO:0004386
Vvi16g852 977 Gene3D - 600 817 IPR027417 -
Vvi16g852 977 Pfam AAA domain 579 780 IPR041679 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g852 - - K10706 vvi:100257019 1874.75
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g852 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008680 0 1 1 0 0 1 2 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 3 4 35