Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g854 ATGTCTAACAGTCTTGCTGTGCTACATGCCCTTGATTCAGCCAGAACACAATGGTACCACATCACCGCCATCATCATCGCCGGCATGGGCTTCTTCACCGACGCCTATGACCTCTTCTGCATCTCCACCATCTCCAAACTCTTGGGCCGTCTCTACTACTACGACCCTCTCCCCCACAACGTCAATAATGCCGTTGTCGGTGTTGCCCTGTTCGGAACCCTAACAGGACAGTTGGTGTTTGGCTGGTTGGGGGACAAGCTCGGCCGGAAAAGAGTTTATGGCTTCACTCTCATTCTTATGGTTGTTTGTGCTATTTGCTCCGGTCTGTCATTTGGGTATAGCCCAAAAGCTGTAATCATTACACTTTGTTTCTTCAGGTTCTGGCTAGGGTTTGGGATTGGTGGAGACTATCCCCTTTCCGCGACGATCATGTCGGAGTATGCGAATAAAAAGACTCGTGGGGCTTTTATTGCGGCAGTGTTTGCTATGCAGGGCATGGGGATCATTTTTGCGGGGCTGGATCCTGTGCGTTCTACCCAACGTGAGGCGGATTTTCTGTGGCGGATCGTGCTGATGCTCGGAGCCTTGCCGGCACTTTTAACGTACTACTGGAGAATGAAGATGCCGGAAACTGAGTTTAAGGCTGCTAACGAGTACTCATTATGGTCGAGAGAGTTCTTTGATCGCCATGGGCTTCACCTGATAGGCACAATGAGCACCTGGTTCTTGTTGGACATAGCCTTCTACAGCCAAAACCTAACTCAGAAGGATATTTTTCCGGCGATGAACCTGGTAAATAAAGATTATCAAGTCAGTGCACTCCGGGAAATGTTCGAGACATCCAGGGCCATGTTTGTGGTGGCCTTGCTGGGGACTTTTCCGGGATATTGGTTCACAGTTTTCTTCATTGAACGGATTGGCCGATACATCATCCAGCTTGTGGGGTTCTTCATGATGTCCTTATTCATGCTGATCATAGGAATCAAATACGAATACCTCAGGGACGATAATAAATGGCTGTTTGCAGTCCTATATGGGCTGACCTTCTTCTTTGCCAATTTCGGTCCAAACAGCACAACTTTTGTTCTTCCGGCCGAGCTGTTCCCGACCCGAGTGAGATCAACATGCCATGCAATGAGCGCTGCGGCCGGGAAGGCTGGGGCTATGATCGGGGCATTTGTGGTGGCGACCTATACTTTGGATGGTAAAGCTAATGAAATTAGGGTAGCCATGATAACCATGGCCTGTACAAATATGCTAGGGTTCTTCTGTACATTCTTGGTGACGGAGACCAAAGGCCGATCCCTGGAGGAAATATCAGGCGAGGATGGAGTCCGAATACAATGGTACCACATCACCGCCATCATCATCTGCATGGGCTTCTTCACAGACGCCTATGACCTCTTCTGCATCTCCACCGCCTGGCAACCTACCCCACAACGTCAACAATGCTGTTGTAGGGCAGTAGGGGTTGCCCTCGTCGGAACCCTAACAGGACAGCTAGTCTTTGGCTGGCTTGGCAACAAGCTCGGCCGGAAAAGAGTTTATGGCTTCACTCTCATTCTTATGGTTATTTGTGCTATTTGCTCTGGTCTGTCATTTGGACTTGTGGGGCTTTTATTGGCAGTTACCCCATATGAAAATGACTCACAGTTTGAACCAACTGGCAAAAGATCCCTGAGAAACCTAACTCAAAGGGAAGAAATATGTACAATTAAACCCAAATAA 1728 48.73 MSNSLAVLHALDSARTQWYHITAIIIAGMGFFTDAYDLFCISTISKLLGRLYYYDPLPHNVNNAVVGVALFGTLTGQLVFGWLGDKLGRKRVYGFTLILMVVCAICSGLSFGYSPKAVIITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGMGIIFAGLDPVRSTQREADFLWRIVLMLGALPALLTYYWRMKMPETEFKAANEYSLWSREFFDRHGLHLIGTMSTWFLLDIAFYSQNLTQKDIFPAMNLVNKDYQVSALREMFETSRAMFVVALLGTFPGYWFTVFFIERIGRYIIQLVGFFMMSLFMLIIGIKYEYLRDDNKWLFAVLYGLTFFFANFGPNSTTFVLPAELFPTRVRSTCHAMSAAAGKAGAMIGAFVVATYTLDGKANEIRVAMITMACTNMLGFFCTFLVTETKGRSLEEISGEDGVRIQWYHITAIIICMGFFTDAYDLFCISTAWQPTPQRQQCCCRAVGVALVGTLTGQLVFGWLGNKLGRKRVYGFTLILMVICAICSGLSFGLVGLLLAVTPYENDSQFEPTGKRSLRNLTQREEICTIKPK* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19301910 19308719 + Vvi16g854 Vvi16g854 778503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g854 575 Pfam Sugar (and other) transporter 278 440 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi16g854 575 Pfam Sugar (and other) transporter 25 211 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi16g854 575 Pfam Sugar (and other) transporter 486 535 IPR005828 GO:0016021|GO:0022857|GO:0055085
Vvi16g854 575 Gene3D MFS general substrate transporter like domains 451 544 IPR036259 -
Vvi16g854 575 Gene3D MFS general substrate transporter like domains 19 449 IPR036259 -
Vvi16g854 575 CDD MFS_PhT 24 432 - -
Vvi16g854 575 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 433 IPR020846 GO:0022857
Vvi16g854 575 SUPERFAMILY MFS general substrate transporter 449 542 IPR036259 -
Vvi16g854 575 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 3 173 - -
Vvi16g854 575 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 212 445 - -
Vvi16g854 575 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 446 535 - -
Vvi16g854 575 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-11 179 211 - -
Vvi16g854 575 SUPERFAMILY MFS general substrate transporter 11 440 IPR036259 -
Vvi16g854 575 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 446 535 - -
Vvi16g854 575 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 212 445 - -
Vvi16g854 575 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 179 211 - -
Vvi16g854 575 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 3 173 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g854 K08176 - vvi:100258742 854.358