Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g859 ATGGGAGTCAAGTCTATTTTCTCGATAATTTTCTTGCTGGGAACAATTTCTTTCCAGGGTTTTGCCGAACCTGTTGAAGATAAACAAGCTTTGCTCGATTTTCTCAATAATATCAATCATTCCCGCACTCTCAATTGGAATGAATACTCCTCCGTCTGCAATACTTGGACTGGAGTGACTTGTAGTGGTGATCATTCAAGGGTTATAGCTCTGCACTTACCCGGAATCGGATTCCGTGGTGAAATCCCTCCAAACACTCTTGGTCAGCTGTCTGCAGTTCAGATTCTGAGTCTTAGATCGAATGCGATTACGAGCCCTTTCCCCTCTGATTTCTCCAAACTCGAAAACTTAACGGCCCTGTATCTTCAGTATAACAAGTTTTCGGGTCCTTTGCCAATTGATTTCTCAGTCTGGAAGAATCTTACCATTATTAATCTCTCAAACAATGGCTTCAATGGTAGTATCCCTTCTTCCATTTCAAAACTGACTCATCTTGCAGCTTTAGATCTCGCTAACAACTCACTTTCAGGAGAAATTCCTGATCTCAATACTTCTAGTTTGCAACACATAAATCTATCCAACAATTTGCTCAATGGCACTTTGCCTCAATCCCTCCGAAGATTCCCCAACTGGGCATTCTCTGGGAACAACATTTCCACAGAAAATGCCATTCCCCCAGTTTTTCCACCTAATAATCCACCATTGAGGAAATCTAAGAAACTCAGTGAACCCGCCTTGTTGGGAATCATACTTGGCGGTTCTGTTGTGGGGTTTGTGTTATTTGCCCTTCTGATGATTGTTTGCTACTCGAAAAGAGACCGGGAAACTGGGTTCATAGTGAAGTCCCAGAAGGGAGAAGGGTCTGTGAAGAAAACTGTTTCTGGGAGCCATGATGGTAGTAACAGGCTTGTGTTCTTTGAGGGTTGTAGTTTTGCATTTGATTTGGAGGATTTGTTAAGGGCCTCTGCTGAAGTTTTGGGTAAGGGAACATTTGGGACAACATATAAGGCAGCTCTGGAGGATGCCACCACTCTGGTGGTCAAAAGATTGAAGGAAGTGAGCCTGGTGAGACGGGATTTTGAGCAGCAGATGCAGATTGTTGGGCAGATAAGGCATGAGAATGTGGCTCCACTAAGGGCTTATTACTATTCCAAGGATGAGAAGCTTATGGTATATGATTTCTACGGTCAAGGAAGTGTATCTTCGATATTGCATGGAAGACGAGGGGATGGTCGGGTTTCGTTAGACTGGGAAACTCGACTCAGAATTGCTCTTGGTGCAGCAAGAGGCATAGCTCATATCCACACAGAGAATGGAGGGAAACTTGTCCATGGAAACATAAAAGCCTCCAACATTTTCCTCAACTCCCGGCGATATGGTTGTGTTTCTGACCTTGGCTTGGGAACACTGATGACCCCAACACCAATGCCTATGACGAGGGCTGCAGGGTACCGAGCCCCAGAGGTGACAGACACCCGAAAAGCGTCTCAAGCATCGGATGTCTACAGCTTTGGGGTCTTGCTCCTTGAGCTTCTAACTGGAAAATCCCCCATTCATAACACCGGTGGTGATGAGGTGATCCACTTGGTGAGATGGGTTAATTCTGTGGTAAGAGAGGAGTGGACCGCAGAAGTGTTCGATGTAGAGCTTTTAAGGTATCCAAATATAGAGGAAGAGATGGTGGAGATGTTACAGATAGGGATGAATTGTGTGGTGAAAATGCCAGAACAAAGACCAAAAATGGCAGAAGTAGTGAAAATGATGGAGAGCATCCAGCAGGTCAATACTGGAAACCGCCCATCCTCTGAAACTAAATCAGAAGTCTCATCTTCAACCCCAACTCCTCCGGCAGCAGCTGAAATGGGTTCCTCCTCTGCCCAACAATGTGTGTGCCCATGCTGGGGTGGGTCTGGGGCCTGGGCTGATGGGGTTGGTGGGTGTGGGTGCAACCTCCGGGTTTTATGGCTCTGGGGCAAGACTTAA 1983 45.94 MGVKSIFSIIFLLGTISFQGFAEPVEDKQALLDFLNNINHSRTLNWNEYSSVCNTWTGVTCSGDHSRVIALHLPGIGFRGEIPPNTLGQLSAVQILSLRSNAITSPFPSDFSKLENLTALYLQYNKFSGPLPIDFSVWKNLTIINLSNNGFNGSIPSSISKLTHLAALDLANNSLSGEIPDLNTSSLQHINLSNNLLNGTLPQSLRRFPNWAFSGNNISTENAIPPVFPPNNPPLRKSKKLSEPALLGIILGGSVVGFVLFALLMIVCYSKRDRETGFIVKSQKGEGSVKKTVSGSHDGSNRLVFFEGCSFAFDLEDLLRASAEVLGKGTFGTTYKAALEDATTLVVKRLKEVSLVRRDFEQQMQIVGQIRHENVAPLRAYYYSKDEKLMVYDFYGQGSVSSILHGRRGDGRVSLDWETRLRIALGAARGIAHIHTENGGKLVHGNIKASNIFLNSRRYGCVSDLGLGTLMTPTPMPMTRAAGYRAPEVTDTRKASQASDVYSFGVLLLELLTGKSPIHNTGGDEVIHLVRWVNSVVREEWTAEVFDVELLRYPNIEEEMVEMLQIGMNCVVKMPEQRPKMAEVVKMMESIQQVNTGNRPSSETKSEVSSSTPTPPAAAEMGSSSAQQCVCPCWGGSGAWADGVGGCGCNLRVLWLWGKT* 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19365746 19368456 - Vvi16g859 Vvi16g859 778508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g859 660 ProSiteProfiles Protein kinase domain profile. 320 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g859 660 Pfam Leucine rich repeat 81 127 IPR001611 GO:0005515
Vvi16g859 660 SUPERFAMILY Protein kinase-like (PK-like) 324 589 IPR011009 -
Vvi16g859 660 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Vvi16g859 660 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Vvi16g859 660 MobiDBLite consensus disorder prediction 593 621 - -
Vvi16g859 660 Gene3D Transferase(Phosphotransferase) domain 1 396 612 - -
Vvi16g859 660 PANTHER LRR RECEPTOR-LIKE KINASE 14 614 - -
Vvi16g859 660 PANTHER OS05G0588300 PROTEIN 14 614 - -
Vvi16g859 660 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515
Vvi16g859 660 Pfam Leucine Rich Repeat 186 206 IPR001611 GO:0005515
Vvi16g859 660 Pfam Protein tyrosine and serine/threonine kinase 324 587 IPR001245 GO:0004672|GO:0006468
Vvi16g859 660 Gene3D Ribonuclease Inhibitor 25 248 IPR032675 -
Vvi16g859 660 SUPERFAMILY L domain-like 38 211 - -
Vvi16g859 660 Gene3D Phosphorylase Kinase; domain 1 287 394 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi2g98 Vvi16g859 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76286 PF07714 PK_Tyr_Ser-Thr 5.00E-32 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g859 - - vvi:100243368 1179.85