Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g860 ATGGCCCAGATCCATTTGAGGCCTGACACAACCCATCGATGTCAAAGCCCAAAGTTGATAGGGCTTGGGCCAAAGAATTTAATATTTTCAAATGAGATGAGATTGTATCTCAAGATATCAGAGTGGCGCAGCGGAAGCGTGGGCATTTCCTTCATCAGCATGGTACGAGAAAAGGATGTTTGTTGGGAATATGCAGAGAAGTTAGATGGAAACAAGGTGAGATGCAAATTTTGCCTTAGAGTTTTAAATGGTGGCATTAGTAGATTGAAGCATCATTTATCCCGGCTTCCCAGTAAAGGTGTAAATCCATGTAGCAAAGTTAGGGATGATGTTACTGATAGAGTGAGGGCCATAATATCATCAAAAGAAGATGGGAAAGAAACTTCTAGTGCTAAGAAGCAAAGAGTAGCAGAAGCTAAATCTCCTGGAAATTACTCTGCAATTAAAGCTCTCATGTCTGTAGAGACACCATCACCAATTGCAAAAATTTTCCCACCAATCACTCACATGGGTCCTTCCTCATCAAATGATGGAGAAAATGCGGAGAGGAGTATTGCTCTGTTCTTTTTTGAAAATAAGCTAGACTTTAGTGTTGCTCGTTCTTCATCCTATCAGCTAATGATAGAAGCAGTATCAAAGTGCGGTCATGGATTTAGAGGCCCATCTGCAGAAATCCTGAAGACTACATGGTTGGAAAGGATTAAGTCTGAAGTGAGCCTACAGTCAAAAGACATTGAGAAGGAGTGGGCTACCACAGGCTGTACCATCATTGCAGACACATGGACAGACAATAAATCAAGAGCTTTGATTAACTTCTTGGTTTCATCACCCTCCAGAACCTTTTTCCATAAATCAGTGGACGCATCCTCATATTTCAAAAACACAAAATATCTTGCTGATTTATTTGATTCTGTTATTCAAGATTTAGGCCCTGATAATGTTGTGCAAATAATCATGGATAGCACTCTCAATTATACTGGTGTAGCTAGCCATATCGTGCAGAACTATGGAACTGTGTTTGTGTCTCCCTGTGCTTCTCAGTGCTTGAATCTGATTTTAGAGGATTTTTGTAAGATAGATTGGGTGAACAGATGTATACTGCAAGCACAGACTATATCAAAGTTTATATATAATAATGCATCAATGCTTGATCTAATGAAGAAATCCACTGGGGGACAAGATCTCATTAGGACTGGTATAACAAAGTCTGTTTCCAACTTCCTCTCATTGCAGTCTATGTTGAAGCAGAGGCCAAGATTGAAGCATATGTTTGGTAGCTCAGAATATTCTACAAACTCTTACTCAAATAAACCACAAAACATATCTTGTATTGCCATTCTTGAAGACAATGATTTCTGGAGGGCAGTGGAAGAGTGTGTGGCGATTTCTGAGCCCTTTCTGAAAGGGTTAAGGGAAGTTTCTGGAGGGAAACCTGCTGTGGGATCTATATATGAGCTAATGACCAAGGCCAAGGAATCAATTAGGACATACTATATTATGGATGAAAGTAAGTGCAAGGCATTTTTAGATATAGTAGATGGAAGGTGGCGGAACCAGCTCCATTCACCTCTACATGCAGCAGCAGCATTTTTGAACCCTAGCATCCAATATAATCCAGAAATCAAATTTATTGGAGCTATAAAAGAAGACTTTTTCAAAGTTCTGGAGAAGCTTCTTCCAACATCTGATATGAGACGTGACATCACAAATCAAATTCTTTTGTTTACAAGGGCGACTGGGATGTTTGGTTGTAACCTAGCAAGGGAAGCACGTGACACAGTCCCACCTGGGCTTTGGTGGGAACAATTTGGCGATTCTGCACCAGTGTTGCAACGAGTTGCCATTAGAATACTCAGTCAAGTTTGCAGCACTTCTACTTTTGAGAGGCACTGGAACACATTCCAGCAGATCCACTCTGAGAAGCGAAATAAGATTGATAAAGAAACATTAAATGATCTTGTGTATATAAATTATAATCTCAAGTTGGCAAGACAAATGAAAATGAAGTCTTCAGAAGCTGATCCTCTCCAATTTGATGACATTGATATGACTTCAGAGTGGGTAGAGGAAACTGAAAACCCAAGCCCTACTCAGTGGCTTGATCGGTTTGGTTCTGCTTTGGATGGGAGTGACTTGAATACAAGACAGTTTAATGCAGCTATATTTGGTTCGAGTGACACCATATTTGGTCTGTGA 2196 40.16 MAQIHLRPDTTHRCQSPKLIGLGPKNLIFSNEMRLYLKISEWRSGSVGISFISMVREKDVCWEYAEKLDGNKVRCKFCLRVLNGGISRLKHHLSRLPSKGVNPCSKVRDDVTDRVRAIISSKEDGKETSSAKKQRVAEAKSPGNYSAIKALMSVETPSPIAKIFPPITHMGPSSSNDGENAERSIALFFFENKLDFSVARSSSYQLMIEAVSKCGHGFRGPSAEILKTTWLERIKSEVSLQSKDIEKEWATTGCTIIADTWTDNKSRALINFLVSSPSRTFFHKSVDASSYFKNTKYLADLFDSVIQDLGPDNVVQIIMDSTLNYTGVASHIVQNYGTVFVSPCASQCLNLILEDFCKIDWVNRCILQAQTISKFIYNNASMLDLMKKSTGGQDLIRTGITKSVSNFLSLQSMLKQRPRLKHMFGSSEYSTNSYSNKPQNISCIAILEDNDFWRAVEECVAISEPFLKGLREVSGGKPAVGSIYELMTKAKESIRTYYIMDESKCKAFLDIVDGRWRNQLHSPLHAAAAFLNPSIQYNPEIKFIGAIKEDFFKVLEKLLPTSDMRRDITNQILLFTRATGMFGCNLAREARDTVPPGLWWEQFGDSAPVLQRVAIRILSQVCSTSTFERHWNTFQQIHSEKRNKIDKETLNDLVYINYNLKLARQMKMKSSEADPLQFDDIDMTSEWVEETENPSPTQWLDRFGSALDGSDLNTRQFNAAIFGSSDTIFGL* 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19380322 19386092 + Vvi16g860 Vvi16g860 778509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g860 731 SUPERFAMILY Ribonuclease H-like 243 663 IPR012337 -
Vvi16g860 731 Pfam Protein of unknown function (DUF 659) 221 372 IPR007021 -
Vvi16g860 731 ProSiteProfiles Zinc finger BED-type profile. 56 111 IPR003656 GO:0003677
Vvi16g860 731 PANTHER HAT TRANSPOSON SUPERFAMILY 55 726 - -
Vvi16g860 731 PANTHER OSJNBA0013A04.12 PROTEIN 55 726 - -
Vvi16g860 731 Pfam hAT family C-terminal dimerisation region 590 660 IPR008906 GO:0046983
Vvi16g860 731 Pfam BED zinc finger 60 95 IPR003656 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g860 - - - vvi:100265581 1363.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g860 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe12g00364 . . . . . . . . . . Cpe13g00301 Bhi12g00598 . . Lac11g0122 . . Lcy12g0101 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001826 2 4 2 1 1 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 8 3 1 67