Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g863 ATGGGGGATCTGTGGACTATGTTTTGTGGGGAGCCCAGTTGTTTGGACAGTGGTGGTTGCAGCTCTGAATTTATTTTTTTCAATCATCCATCTTCTTGTGCGAACCATGCCTTGACAGTTTGTTTCGATATTCTGCTATTTGTCATGTTCTTATTCACTATGATTCAGAGGACATCATCAAAGCCAGTTCATGTCCCAGGTCAGTTTCAAAGGTTTTCGCCCCTGCAGATATCTTCAGCCATTTTTAACGGCTGTTTGGGATTGGTGTACTTGGGCTTGGGTGTTTGGATCTTAGAAGAAAATTTGAGGAAGACCCAGATTGTTTTACCTCTTCATTGGTCTCCATTGCGGATTTTGTCTATTCTGGCATTCTTGTTTTCTGGCATTACCGGTGTTTTATCCATTTTTTCTGCCATTGTTTACAAAGAAGCATCAGTTGAGATAGTTTTAAACGTTCTGTCTCTTCCTGGAGCAATCTTATTACTTCTATGTGCTTACAAGGGCTACAAATATGAAGAAACTGATAAAATTGTTAATGGAAGTGGCCTTTACACTCCCCTGAATGGTGAGGCTGATGGCAGTGCTAAAACTGATTCTGTTGGTGATGTTACTCCATTTGCCAAAGCTGGATTCTTCAGTAGCATGTCGTTTTGGTGGTTGAATCCATTAATGAAAAGGGGTACAAAGAAAACTCTTGAGAATGAAGATATACCCAAGTTGCGTGAAGAAGATCGAGCAGAAAGCTGTTACTTGCAGTTCTTGGAGGAATTGATCAAGCAGAAACAAATAGAGCCATCATCCCAACCCTCAATATTGAGGGTAATCATCTTATGCTACTGGAAAGATATTTTCATCTCTGGGTTCTTTGCCCTAGTAAAGATTCTCACTCTCTCCACTGGTCCTCTGCTTCTTAATGCCTTCATTAAGGTTGCTGAAGGTAAAGAACTTTTTAAAAATGAGGGTTATGTGCTTGCCATGGCATTGTTTGTTTCAAAGAACGTGGAATCCTTATCACAAAGGCAATGGTACTTTCGAAGCAGGCTTATTGGTTTGAGAGTAAGGTCTTTGCTCACAGCAGCTATTTATAAGAAGCAATTGAGATTATCCAATGCTGCCAAAATGATACACTCTTCTGGTGAGATAACGAACTATGTTACTGTAGATGCTTATAGAATCGGTGAATTCCCTTTCTGGTTTCATCAGACGTGGACAACGAGCCTCCAGCTCTGCATTGTGCTTGTGTTGAAATTATATGCATGGGAAAACCATTTCAAGAATGTTATAGAAAAATTGAGGAATGTAGAGTACAAATGGTTATCAGGAGTGCAGTTGAGGAAAGGATACAATGGATTTCTCTTTTGGTCATCCCCTGTATTGGTCTCTGCTGCAACTTTTGGGGCATGCTTTTTCCTTGGAATTCCTCTAAATGCTAGCAATGTTTTCACCTTTGTTGCAGCTTTGCGCCTTGTTCAGGACCCTATTAGATCGATCCCTGATGTTATTGGTGTGGTGATTCAAGCAAAAGTTGCATTTGCACGAATTGTGAAGTTTCTTGAAGCGCCTGAGCTGCAGACTTCAAATGTGCGGCAGAAGTCCAACATAGAGAATATAAGCAACGCCATTTCGATCAAGTCGGCCAATTTTTCATGGGAAGAGAAATTATCAAAGTCAACACTAAGAGACATAAGTTTAGAGGTTAGAACTGGTGAAAAGGTGGCTATTTGTGGTGAAGTCGGCTCAGGGAAATCAACTCTTCTGGCTGCAATTCTTGGAGAGATTCCAGATGTTCAGGGAACTATTCGAGTTTATGGAAGAATTGCCTATGTTTCTCAGACAGCTTGGATCCAGACAGGCAGTATACAAGAGAATATTTTATTTGGGTCCTCTATGGATCCTGAAAGATACCAAGCAACACTTGAGAAGTGTTCATTAGTAAAGGACCTTGACTTGCTGCCCTATGGTGATCTCACTGAAATAGGGGAACGAGGAGTTAACCTGAGCGGTGGTCAGAAGCAGCGGATTCAACTTGCCCGTGCCCTTTATCAGGATGCTGATATATATCTCTTGGATGACCCATTTAGTGCTGTTGATGCACATACTGCTACAAGTCTTTTTAATGAATATGTTATGGATGCACTTTCTGGGAAGACGGTCCTACTTGTAACCCACCAAGTTGACTTCCTTCCTGCATTTGATTCTGTTCTGTTGATGTCAGACGGGGAAATCATACAAGCGGCCCCTTATCAGCAGCTATTGGTTTCAAGCCAAGAATTTGTGGATCTTGTCAATGCACACAAAGAGACTGCAGGTTCTGAAAGGCTTGCAGAGGTTACACCTGAGAAATTTGAAAATTCTGTTAGAGAGATCAACAAGACTTATACAGAGAAGCAATTCAAAGCACCTAGCGGTGATCAGTTGATCAAGCAAGAAGAGAGAGAAATAGGAGATATGGGTTTTAAGCCTTATATGCAGTATTTGAGTCAGAACAAAGGCTACTTATTCTTCTCCTTGGCTGCTCTCTCTCACATTTTGTTTGTGGCCGGTCAGATATCTCAGAACTCTTGGATGGCTGCTAATGTTGACAATCCTAACATCAGCACACTGCAGTTGATTGTGGTTTACTTGTTGATTGGAGCAACCTCAACACTTTTTTTGCTCTCTAGAGCTCTTTTTGTGGTTGCTTTGGGTCTTCAATCATCAAAATCTTTATTTACGCAATTGCTGAACTCCCTTTTCCGTGCACCTATGTCTTTTTATGACTCTACGCCTCTAGGAAGGATACTGAGTAGGATCTCGAATGATTTAAGTATTGTCGATCTTGATGTTCCATTCAGCTTTGTCTTTGCTTTTGGGGCTACCACAAATGCCTATTCAAATCTTGGAGTATTAGCTGTTGTGACTTGGCAAGTCCTGTTTGTCTCCATACCGATGATCTATGTGGCTATTCGCTTACAGAGATACTACTTTGCCTCTGCAAAAGAGTTGATGCGGATCAATGGTACGACCAAGTCTTTGGTGGCAAACCATCTGGCTGAGTCTATAGCAGGAGCCATGACAATCAGAGCTTTCGAGGAGGAAGAAAGATTCTTTGTAAAGAATATGGACTTCATTGATACAAATGCTAGCCCATTCTTCCACAGTTTTGCTGCAAATGAGTGGTTAATTCAAAGATTGGAAGCACTTAGTGCCATGGTCCTCTCCTCATCGGCTCTCTGCATGATTTTGCTTCCTCCTGGTACTTTTACCGCTGGATTTATTGGAATGGCAATGTCTTATGGTCTCTCATTAAACGTGTCCCTGGTTTTTTCTATTCAAAATCAGTGCATTCTAGCAAATTACATCATTTCTGTAGAAAGGCTAAACCAATACATGCATATACCGAGCGAAGCCCCAGAAGTGATCGAAGGGAGTCGTCCCCCACCCAATTGGCCAGCTGTGGGGAGAGTGGACATACATGATTTACAGATTAGGTATAGACCCGACACACCCCTTGTTCTTCGTGGGATCAACTGCACATTTGAAGGAGGACATAAAATTGGCATCGTTGGACGAACTGGCAGTGGGAAGACTACTCTCATTGGTGCCTTGTTTCGGTTGGTAGAACCAGCAGGAGGAAAGATTATAGTAGATGGCATTGACATCTCTACAATTGGACTTCATGATCTGAGGTCACATTTTGGGATTATTCCTCAAGATCCTACTCTTTTCAATGGCGCCGTGAGATACAATTTGGATCCCTTGTCCCAACACACTGACCATGAAATATGGGAGGTTCTTGGAAAATGTCAGCTTCAGGAGGCTGTCCAGGAAAAGGAAGAGGGTCTAGGCTCCATTGTTGCGGAAGGTGGATCAAACTGGAGCATGGGGCAGAGGCAGCTCTTCTGTTTGGGGCGTGCCCTCTTGCGAAGAAGCCGGATACTGGTTCTTGATGAAGCAACTGCATCGATCGACAATGCAACCGACCTGATTCTGCAGAAAACTATAAGGACCGAGTTTGCAGACTGCACTGTGATCACCGTGGCTCACAGAATACCAACTGTGATGGACTGCACAATGGTTCTTGCCATCAGCGACGGAAAACTAGTTGAGTATGATGAACCAGCAAAGCTAATGAAGAGGGAAGGCTCATTATTTGGACAGCTAGTCAGGGAATACTGGTCCCATTTTCACTCAGCGGAATCACATTGA 4188 42.57 MGDLWTMFCGEPSCLDSGGCSSEFIFFNHPSSCANHALTVCFDILLFVMFLFTMIQRTSSKPVHVPGQFQRFSPLQISSAIFNGCLGLVYLGLGVWILEENLRKTQIVLPLHWSPLRILSILAFLFSGITGVLSIFSAIVYKEASVEIVLNVLSLPGAILLLLCAYKGYKYEETDKIVNGSGLYTPLNGEADGSAKTDSVGDVTPFAKAGFFSSMSFWWLNPLMKRGTKKTLENEDIPKLREEDRAESCYLQFLEELIKQKQIEPSSQPSILRVIILCYWKDIFISGFFALVKILTLSTGPLLLNAFIKVAEGKELFKNEGYVLAMALFVSKNVESLSQRQWYFRSRLIGLRVRSLLTAAIYKKQLRLSNAAKMIHSSGEITNYVTVDAYRIGEFPFWFHQTWTTSLQLCIVLVLKLYAWENHFKNVIEKLRNVEYKWLSGVQLRKGYNGFLFWSSPVLVSAATFGACFFLGIPLNASNVFTFVAALRLVQDPIRSIPDVIGVVIQAKVAFARIVKFLEAPELQTSNVRQKSNIENISNAISIKSANFSWEEKLSKSTLRDISLEVRTGEKVAICGEVGSGKSTLLAAILGEIPDVQGTIRVYGRIAYVSQTAWIQTGSIQENILFGSSMDPERYQATLEKCSLVKDLDLLPYGDLTEIGERGVNLSGGQKQRIQLARALYQDADIYLLDDPFSAVDAHTATSLFNEYVMDALSGKTVLLVTHQVDFLPAFDSVLLMSDGEIIQAAPYQQLLVSSQEFVDLVNAHKETAGSERLAEVTPEKFENSVREINKTYTEKQFKAPSGDQLIKQEEREIGDMGFKPYMQYLSQNKGYLFFSLAALSHILFVAGQISQNSWMAANVDNPNISTLQLIVVYLLIGATSTLFLLSRALFVVALGLQSSKSLFTQLLNSLFRAPMSFYDSTPLGRILSRISNDLSIVDLDVPFSFVFAFGATTNAYSNLGVLAVVTWQVLFVSIPMIYVAIRLQRYYFASAKELMRINGTTKSLVANHLAESIAGAMTIRAFEEEERFFVKNMDFIDTNASPFFHSFAANEWLIQRLEALSAMVLSSSALCMILLPPGTFTAGFIGMAMSYGLSLNVSLVFSIQNQCILANYIISVERLNQYMHIPSEAPEVIEGSRPPPNWPAVGRVDIHDLQIRYRPDTPLVLRGINCTFEGGHKIGIVGRTGSGKTTLIGALFRLVEPAGGKIIVDGIDISTIGLHDLRSHFGIIPQDPTLFNGAVRYNLDPLSQHTDHEIWEVLGKCQLQEAVQEKEEGLGSIVAEGGSNWSMGQRQLFCLGRALLRRSRILVLDEATASIDNATDLILQKTIRTEFADCTVITVAHRIPTVMDCTMVLAISDGKLVEYDEPAKLMKREGSLFGQLVREYWSHFHSAESH* 1396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19447212 19454986 + Vvi16g863 Vvi16g863 778512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g863 1395 Gene3D - 1133 1383 IPR027417 -
Vvi16g863 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1140 1376 IPR027417 -
Vvi16g863 1395 CDD ABC_6TM_ABCC_D2 831 1124 IPR044726 GO:0140359
Vvi16g863 1395 Gene3D ABC transporter type 1, transmembrane domain 798 1130 IPR036640 GO:0005524|GO:0016021
Vvi16g863 1395 Gene3D ABC transporter type 1, transmembrane domain 414 523 IPR036640 GO:0005524|GO:0016021
Vvi16g863 1395 SMART AAA_5 1175 1367 IPR003593 -
Vvi16g863 1395 SMART AAA_5 568 741 IPR003593 -
Vvi16g863 1395 Pfam ABC transporter 559 693 IPR003439 GO:0005524
Vvi16g863 1395 Pfam ABC transporter 1166 1314 IPR003439 GO:0005524
Vvi16g863 1395 Pfam ABC transporter transmembrane region 283 414 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g863 1395 Pfam ABC transporter transmembrane region 834 1075 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g863 1395 Gene3D - 536 770 IPR027417 -
Vvi16g863 1395 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 414 1395 - -
Vvi16g863 1395 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 114 415 - -
Vvi16g863 1395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 284 415 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g863 1395 SUPERFAMILY ABC transporter transmembrane region 823 1129 IPR036640 GO:0005524|GO:0016021
Vvi16g863 1395 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1151 1383 IPR003439 GO:0005524
Vvi16g863 1395 CDD ABCC_MRP_domain2 1147 1367 - -
Vvi16g863 1395 CDD ABC_6TM_ABCC_D1 285 514 IPR044746 GO:0140359
Vvi16g863 1395 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 543 764 IPR003439 GO:0005524
Vvi16g863 1395 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 414 1395 - -
Vvi16g863 1395 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 114 415 - -
Vvi16g863 1395 CDD ABCC_MRP_domain1 541 741 - -
Vvi16g863 1395 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524
Vvi16g863 1395 SUPERFAMILY ABC transporter transmembrane region 272 519 IPR036640 GO:0005524|GO:0016021
Vvi16g863 1395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 416 506 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g863 1395 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 845 1112 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi16g863 1395 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 535 764 IPR027417 -
Vvi16g863 1395 Gene3D ABC transporter type 1, transmembrane domain 271 413 IPR036640 GO:0005524|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g863 K05666 ABCC2; ATP-binding cassette, subfamily C (CFTR/MRP), member 2 - cit:102616643 2140.15
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g863 . . . . . . . Bma14g01983 . . . . . . . . . . . . . . . . . . . . . . . . Cone5ag0661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003473 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 3 1 1 1 1 1 4 1 8 48