Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g866 ATGGGCGATAGTTTATCCGACTTCTTTGAAGAGCCTGAGTTTGGTGGCGAAACCAGCTTGACTGGCGTAGCTTCCCCCGACGATCTCGATCTCTTCAGCATTTTCGAGAGTCTGGAGGGTGTCTCCGAGGTTCCTCCATTGGAGGAGACTGTGTTGGGCTCCAAAGAAGGTGAGGAAACAGCAAGATTGGTCTCTCAAAAATCTACTTCTTCCAGTGCTTTGCAGGAGTCCGAGACGGAGCTCGAAGCTTCCCCGAAGAGGAAGAGGCCCAAGCTCGCCGCACCCACTTCGTCCGAAGAGGGGAACCCAGATGGACAACAGAGGGTGTCGCATATAACTGTGGAGAGGAACCGCAGAAAGCAAATGAACGAGCATTTATCAGTGTTGAGGTCCCTTATGCCTTGCTTCTATGTCAAAAGAGGAGATCAAGCATCCATAATAGGCGGGGTGGTGGATTACATCAAGGAGTTGCAGCAAGTTCTACGGTCACTTGAAGCCAAGAAGCAAAGAAAAGTTTACAGTGAAGTTCTAAGCCCTAGGGTTGTTTCAAGTCCAAGGCCTCCGCCAATCAGCCCTAGAAAGCCACCATTAAGCCCTAGAATAAGCTTACCCATAAGCCCAAGAACCCCGCAACCAACCAGCCCTTACAAGCCTGTTAGGTTGCAGCAGGGTTACCTTTCCCCGACCATAGCTCCTTCCCTCGAACCATCTCCTTCTTCTTCAACCTCCTCCAATGACAACGCCAACGAGCTCATCGTAAATTCAAAATCAGCCATTGCTGACGTAGAGGTGAAGTACTCCTGCCCAAACGTTGTTTTGAAGACAAAATCTTCACGGATTCCCGGCCAAGCAGTGAAAATCATTTCCGCTCTAGAGGACCTTTCGCTTGAAATTCTCCATGTTAGCATCAGCTCAATCGATGAAACCATGCTCAATTCCTTCACTATCAAGTTTGGAATTGAATGCCAACTTAGCGCCGAGGAACTCGCTCACCAAGTCCAGCAGACATTCTGCTAA 1017 49.26 MGDSLSDFFEEPEFGGETSLTGVASPDDLDLFSIFESLEGVSEVPPLEETVLGSKEGEETARLVSQKSTSSSALQESETELEASPKRKRPKLAAPTSSEEGNPDGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYIKELQQVLRSLEAKKQRKVYSEVLSPRVVSSPRPPPISPRKPPLSPRISLPISPRTPQPTSPYKPVRLQQGYLSPTIAPSLEPSPSSSTSSNDNANELIVNSKSAIADVEVKYSCPNVVLKTKSSRIPGQAVKIISALEDLSLEILHVSISSIDETMLNSFTIKFGIECQLSAEELAHQVQQTFC* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19472592 19474275 + Vvi16g866 Vvi16g866 778515

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g866 338 MobiDBLite consensus disorder prediction 1 25 - -
Vvi16g866 338 PANTHER - 1 338 - -
Vvi16g866 338 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 182 IPR036638 GO:0046983
Vvi16g866 338 MobiDBLite consensus disorder prediction 63 79 - -
Vvi16g866 338 MobiDBLite consensus disorder prediction 80 94 - -
Vvi16g866 338 SMART finulus 112 163 IPR011598 GO:0046983
Vvi16g866 338 MobiDBLite consensus disorder prediction 43 109 - -
Vvi16g866 338 CDD bHLH_AtFAMA_like 110 182 - -
Vvi16g866 338 MobiDBLite consensus disorder prediction 175 219 - -
Vvi16g866 338 PANTHER TRANSCRIPTION FACTOR FAMA 1 338 IPR044283 GO:0003700|GO:0010052
Vvi16g866 338 Pfam Helix-loop-helix DNA-binding domain 107 158 IPR011598 GO:0046983
Vvi16g866 338 MobiDBLite consensus disorder prediction 182 214 - -
Vvi16g866 338 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 106 157 IPR011598 GO:0046983
Vvi16g866 338 Gene3D - 98 171 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g866 K20558 SPCH; transcription factor SPEECHLESS - vvi:100262241 577.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g866 . . Bda05g00110 . Bpe03g00175 . Bma10g01285 . . Cmo18g01328 . . . . Sed07g0811 . Cpe14g00057 Bhi01g01450 Tan01g0149 Cmetu06g1760 . . Mch10g0088 . . . . . . . . Cone1ag0958 Cone5ag0651 Cone14ag0031 . . . . . Blo07g00350 Blo09g00040 . Bda15g00775 . Bpe12g00372 . . . . . Cma16g00072 Cma18g01299 Car16g00063 Car18g01215 Cpe09g00043 . . . . . . . . . . . . . . . . Csa03g02197 Chy06g01256 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008152 1 1 1 1 1 1 2 1 1 1 0 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 2 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14160 PF00010 HLH 2.40E-11 No_clan Vvi TF