Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g867 ATGGAGAACATGGGAAGTTGGGAACAAAAGAATCTGATAAATGAGCTTACGAATGGGAGAGAGCTAGCCAAACAGCTACAAATCCATCTCAGCGTGTCGTCTTCTTCACATGACGCCCGTGAATCCTTGGTCCAAAAGATCCTAACTTCATACGAGAAGGCCCTTTCATTGCTGAGGTGTAGCGGCCCAGTGGGCGAGCCACAGGCCGCCGCAGCAGGCGGAGGAGGAGCAATTGGAATAGGGATGTCTGAGTCTCCACGCTCGCTCAGTGGGAGTCCTAGGAGCGAAGATTCTGATAAGGAGCAGGAGCACAAAGATGGGTCTAGGAAGAGAAAGACATTGCCAAGGTGGACAAAGCAAGTGCAGATGTCTCTAGGGCCAGGGCCAGAAGGCCCTCTTGATGATGGGTTTAGTTGGAGGAAGTATGGGCAGAAGGACATTCTCGGAGCCAAATATCCAAGGAGCTATTACAAATGCACTCATAGAAATGCCCAAGGCTGTTTGGCTACAAAGCAAGTTCAAAGATCAGACGATGACCCAACCATCTTTGAAATCACCTACCGTGGAAGACACACTTGCACCCAAGTCTCCCAACAAATTCCACCGCCGGCAGCACTGCCGGGAAACCAAGGACTGATGGACAGCAAAGATCATCAGCAATTCAACCTCCAACCCCAACAAAACCAGCAACAAGCACAAGACATGCTCTTGAGCTTCCAAAGTGGCCTCAGAGTCGTAACAGAAGGCTTGGACACGCCAAGCGACCAAGCATTTCCCCCCTTTTGCTTCACTTCAACGTCTAATATTAAGGTCGAAGAACCTGGCTTCTCGCCTTCCATGATGGACAACAATATCGTTGGTAATTTTCCTACCTCATTTGTATCTCCTGCAGCATCTAGATCAAACTATTTTTCCATGTCGTCTGATGAAATGAACAGCCTTGGAGGAAACCAAAACCTGCAGGCCCCCGAAGCCAATCTCAATGAGATAATCTCAGCTGCTGCTTCAACCACAAACCCTCAGTTTGAGCAGTTCCCGTTTGGTTCCATGGAATTCGATCCGAACTTTAACTTCGACCACCTGGGATTCTTTTAA 1095 48.77 MENMGSWEQKNLINELTNGRELAKQLQIHLSVSSSSHDARESLVQKILTSYEKALSLLRCSGPVGEPQAAAAGGGGAIGIGMSESPRSLSGSPRSEDSDKEQEHKDGSRKRKTLPRWTKQVQMSLGPGPEGPLDDGFSWRKYGQKDILGAKYPRSYYKCTHRNAQGCLATKQVQRSDDDPTIFEITYRGRHTCTQVSQQIPPPAALPGNQGLMDSKDHQQFNLQPQQNQQQAQDMLLSFQSGLRVVTEGLDTPSDQAFPPFCFTSTSNIKVEEPGFSPSMMDNNIVGNFPTSFVSPAASRSNYFSMSSDEMNSLGGNQNLQAPEANLNEIISAAASTTNPQFEQFPFGSMEFDPNFNFDHLGFF* 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19477140 19479868 - Vvi16g867 Vvi16g867 778516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g867 364 SMART WRKY_cls 133 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g867 364 ProSiteProfiles WRKY domain profile. 128 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g867 364 MobiDBLite consensus disorder prediction 93 110 - -
Vvi16g867 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 360 - -
Vvi16g867 364 Pfam WRKY DNA -binding domain 134 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi16g867 364 Gene3D WRKY domain 128 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g867 364 SUPERFAMILY WRKY DNA-binding domain 131 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi16g867 364 MobiDBLite consensus disorder prediction 67 132 - -
Vvi16g867 364 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 360 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi15g747 Vvi16g867 ECH
Vvi2g118 Vvi16g867 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14161 PF03106 WRKY 1.50E-27 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g867 - - vvi:100256922 703.745