Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g868 ATGGGAGTTGTGACTGTTTCTAGCTCAGCTTCAGCTTCTCGAACCCCATTTGGATTGAACGCAAAATTTTCAAATCATCAAACCCCTTTGAGGAGGCCCCTAGTTTTGGCATTCAAAGCAGATAAAGCCAAGAACATAGCTCTGGTTACTCCCCATGAGCCAATCCCTTTACCTATAGAGACTTCTAAAGATCATAAGAAGAGACTTCGTAGGGCTTCCAAGCCTTCAAAGAGAGTAAAAGCGGTCAGTACAGATGAAGTATCGCCATGTAGTGTAGAATTGGATTACAATGAAGCTGCTGCCAAACTTGAAAATATATACAAGCTTAGCCCTGCAACTGATGTTTCAGAGGCAGAAGATTTAGAACGTGTCGTTAGGAGAGGGCGACAGAGGAGGAAGAGAGTTACTTTGGCTGATGACAAGGCAGAGAAGGAGGTTAGTGATAATGTAGTGAGGATCCATAATAAGAAACCGAAACGATTGAGTCTTGAGAAGAGGATTGCTTTGAGTAAGATGAAGCAAGAAAAAGCAGTTGCTTCAATTCAAAAGAAAAGGGACAGTAAAAATGAAGATGAAAATATTGATGTGCTTGTTAGGGAGTACTCGGCTTCTACTGACTTGGTCAGTTTGGACTGGAAGAAAATGAAGATACCACCCGTGCTTCCTCCCTCAGAGCATGCATGGCTATTCAAGCTAATGCAGCCCATGAAGGGACTCCTTGAAGTGAAAGACAACTTACAAAAGGATTTGGGGAGAGAACCAACCGATGGGGAATTAGCAGAGGCCATGAGTATGAGTGCAGTTCAAGTAAGAAGACACATGGAAGTTGGTCAAGCAGCAAGAAACAAGCTGATTAAGCACAATCTTCGACTGGTTTTGTTTGTAATCAACAAGTACTTTCAAGAGTTTGCCAATGGCCCAAAGTTTCAAGACCTGTGTCAAGCAGGAGTGAAGGGCCTTATCACAGCCATCGATCGCTTTGAACCAAAAAGGAGTTTCCGGCTCTCAACCTATGGTCTGTTTTGGATTAGGCATGCCATCATGCGCTCCATGACACTCTCAAGCTTTACACGCGTCTCCTTTGGCCTTGAGTCGGTTAGGGTAGAAATCCAAAGAGCAAAACTAGAGTTGTTGTTCAAGCTCCAAAGATTACCAACAGAGGAAGAGATAATAGAAAAGGTTGGAATCTCCCCTGAGAGGTACCATGAAGTGATGAGGGCCTCAAAATCCGTCCTCTCTCTCCATGCAAGGCATGCAACCACACAAGAAGAGTACATCAATGGAATTACAGATGTTGAAGGTGTTGGGGGTGATAGGGGGCGGCAACTTGCTCTTCTCAGACTTGCTCTTGATGATGTGCTCGATTCTCTGAAGCCAAAGGAGAGCTTGGTGATGAGACAGAGATATGGTCTTGATGGTAAGGGTGATCGGACACTGGGGGAGATTGCAGGAAACCTAAGCATCTCAAGAGAAATGGTTCGAAAGCATGAGGTGAAGGCTCTCATGAAGCTCAAGCATCCAGCACGAGTGGATTATCTTCGCCAATACATATTCTAA 1557 44.38 MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRKRVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDENIDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGREPTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEGVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQYIF* 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19488835 19492409 + Vvi16g868 Vvi16g868 778517

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g868 518 PANTHER RNA POLYMERASE SIGMA FACTOR SIGE, CHLOROPLASTIC/MITOCHONDRIAL 2 517 - -
Vvi16g868 518 Pfam Sigma-70 region 2 284 349 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 445 516 IPR013324 -
Vvi16g868 518 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 2 517 - -
Vvi16g868 518 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 280 506 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 Pfam Sigma-70 region 3 368 432 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 Pfam Sigma-70 region 3 240 279 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 Gene3D - 274 352 - -
Vvi16g868 518 PRINTS Major sigma-70 factor signature 311 324 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 PRINTS Major sigma-70 factor signature 335 343 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 PRINTS Major sigma-70 factor signature 457 469 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 PRINTS Major sigma-70 factor signature 478 493 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 PRINTS Major sigma-70 factor signature 493 504 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 Pfam Sigma-70, region 4 453 506 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vvi16g868 518 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 363 423 IPR013324 -
Vvi16g868 518 Gene3D - 441 518 IPR036388 -
Vvi16g868 518 Gene3D - 357 409 IPR036388 -
Vvi16g868 518 Gene3D - 232 273 IPR036388 -
Vvi16g868 518 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 202 351 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g868 K03093 sigI; RNA polymerase sigma factor - vvi:100250120 965.296
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g868 Blo06g01076 . . . . . . . Cmo16g00073 Cmo18g01330 . . . . Sed07g0818 . Cpe14g00055 Bhi01g01453 Tan01g0146 Cmetu06g0694 . Hepe07g0087 . . . . . . . . . . . Cone14ag0030 Cone15ag0032 . . . . . . . Bda15g00776 . Bpe12g00373 . . . . . Cma16g00070 Cma18g01301 Car16g00061 Car18g01217 Cpe09g00041 . . . . . . . . Cla05g00949 Cam05g1040 Cec05g1045 Cco05g1039 Clacu05g1031 Cmu05g0981 Cre05g1060 . Csa03g02199 Chy06g01254 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005753 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38