Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g871 ATGTTGATCAAAGCTTCCATTTCCAAAGCTTGGAAACACCAAAGGCTAAAGGAGTTCAAATTATACACAGCACATCAATCCAATCTCAGTGAAATTATATCCACAAACATTGCTATAAGCAATTATGCAAAACAATCAAAACTGGATGTTGCCCGCCAACTGTTCGACCAGATGCCTCAACGAACTGTCGTGTCGTGGAACACTATGATATCTAGCTACTCAAAGCATGGACGATTCAGTGAAGCTCTATTTCTAGTTTACTCCATGCACCGCAGCCATATGAAGCTCAGTGAATCCACGTTCTCGTCGGTTTTGAGTGTTTGTGCTCGTTTGAGGTGTTTGCGCGACGGGAAGTTGATCCATTGTCTTGTTCTAAAATCTGGGTCGGAGAGTTTTGAGCTTGTGGGGAGTGCTTTGCTGTATTTTTATGCAAGTTGCTTTGAAATTGGGGAGGCACGGCGGGTTTTTGATGTGTTGGTTCGGAGGAATGAGGTGTTGTGGAGTTTGATGCTTGTGGGGTATGTGACTTGTAATGTGATGGATGATGCTTTGAGTGTGTTTGTGAAGATGCCGAGGAGAGATGTTGTTGCCTGGACGACTTTGATTTCTGGGTTTTCTAAGAATGGGGATGGTTGTGGGAAGGCCTTGGAGATTTTTAGGTTGATGATGAGGAGTGGTGAAACGACTCCCAATGAGTTTACTTTTGATTGTGTGGTGAGGGCTTGTGGTAGACTCGGGATTTTGAGTGTAGGGAGGACTGTTCATGGGCTTTTGATGAAATGTGGGTTGGAATATGATCCCTCAATTGGAGGGGCTCTTGTTGAGTTCTATTGTGAATGCGAAGCTATTGATGATGCCTTGAGAGTGTGTAAAGGCGTTGTTAACCCGTGTTTAAATGCTTTGAATTCCTTAATTGAAGGGCTTATATCGATGGGCAGAATTGAGGATGCTGAGCTGGTTTTTAACGGAATGACAGAGATGAATCCAGTTTCATATAACTTAATGATTAAAGGGTATGCAGTTGGTGGTCAAATGGATGATTCTAAGAGATTGTTTGAGAAAATGCCTTGCAGAACTATATTTTCTTCAAATACTATGATTTCAGTGTACTCTAGGAATGGAGAAATTGATAAAGCTTTGGAACTTTTTGAAGAAACTAAGAATGAAAAAGATCCTGTGACATGGAATTCAATGATATCGGGTTATATTCATAGTGGTCAACCTGAAGAGGCTTTGAAACTATATATAACAATGCACAGATTATCAATACAACAAACTCAATCTACATTCTCTGCTCTGTTCCATGCATGTTCATGTCTTGGATCCCTTCATCAAGGACAATTACTGCATGCCCATCTGATTAAAACACCATTTGAATCAAATGTTTATGTTGGAACATCCCTCATAGATATGTACTCCAAATGTGGGAGCATCATGGAGGCTCAAACATCTTTTGTGAGCATCTTTTCACCCAACGTGGCAGCTTGGACGGCTCTGATCAATGGTCATGCATATCATGGGCTCGGGTCTGAGGCAATTTCACTCTTTGATCGTATGATAGAGCAAGGATTAGCCCCAAATGGAGCTACTTTTGTTGGAGTTCTGTCTGCTTGTAGTCGTGCAGGTCTGGTCAATGAAGGAATGAAAATTTTCCACTCAATGGAGAGATGTTATAGTGTAACCCCAACATTAGAACACTATGCATGTGTGGTTGATCTTCTGGGCCGATCAGGCCATATACGAGAAGCAGAGGAGTTTATCAAGAAGATGCCACTTGAAGCAGATGGGGTTGTCTGGGGAGCATTGCTTAGTGCTTGTTGGTTCTGGATGGACCTGGAAGTGGGTGAGAGAGTGGCTGAGAAGATGTTTAGTTTTGATCCCAAGCCAATCTCTTCTTATGTTATTTTGTCCAACATATATGCAGGGCTAGGGAGGTGGAGGGAGAAGATGATGGTAAGGAAGATATTGAGGGGTTTCAAAGTGAAGAAGGATCCTGGATGTAGTTGGATTGAGCTTAACAATAAAATTCATGTGTTCTCTATAGAAGATAGATCCCATCCATATTGTAATATGATTTATGCAACTTTGGAGCACCTAACAGCAAATATAAACTCAGTTGTTCATTTTGATCATGTTTCTATACCAATAACACAGGCTGTTAATTTCAGCACACCATCCTTTAATTAG 2187 41.34 MLIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDAELVFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVFSIEDRSHPYCNMIYATLEHLTANINSVVHFDHVSIPITQAVNFSTPSFN* 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 19516021 19518208 - Vvi16g871 Vvi16g871 778520

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g871 728 PANTHER BNACNNG15330D PROTEIN 335 388 - -
Vvi16g871 728 PANTHER BNACNNG15330D PROTEIN 467 705 - -
Vvi16g871 728 PANTHER BNACNNG15330D PROTEIN 388 503 - -
Vvi16g871 728 PANTHER BNACNNG15330D PROTEIN 12 190 - -
Vvi16g871 728 PANTHER BNACNNG15330D PROTEIN 174 324 - -
Vvi16g871 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 229 IPR002885 -
Vvi16g871 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Vvi16g871 728 Pfam E motif 611 671 IPR046848 -
Vvi16g871 728 Gene3D Tetratricopeptide repeat domain 466 709 IPR011990 GO:0005515
Vvi16g871 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Vvi16g871 728 SUPERFAMILY TPR-like 271 431 IPR011990 GO:0005515
Vvi16g871 728 Pfam PPR repeat 35 61 IPR002885 -
Vvi16g871 728 Pfam PPR repeat 362 387 IPR002885 -
Vvi16g871 728 Pfam PPR repeat 330 357 IPR002885 -
Vvi16g871 728 Pfam PPR repeat 302 327 IPR002885 -
Vvi16g871 728 Pfam PPR repeat 567 590 IPR002885 -
Vvi16g871 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Vvi16g871 728 PANTHER - 174 324 - -
Vvi16g871 728 PANTHER - 467 705 - -
Vvi16g871 728 PANTHER - 335 388 - -
Vvi16g871 728 PANTHER - 388 503 - -
Vvi16g871 728 PANTHER - 12 190 - -
Vvi16g871 728 Gene3D Tetratricopeptide repeat domain 12 125 IPR011990 GO:0005515
Vvi16g871 728 Gene3D Tetratricopeptide repeat domain 126 249 IPR011990 GO:0005515
Vvi16g871 728 Gene3D Tetratricopeptide repeat domain 359 445 IPR011990 GO:0005515
Vvi16g871 728 Gene3D Tetratricopeptide repeat domain 258 358 IPR011990 GO:0005515
Vvi16g871 728 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 391 425 IPR002885 -
Vvi16g871 728 Pfam PPR repeat family 391 437 IPR002885 -
Vvi16g871 728 Pfam PPR repeat family 193 242 IPR002885 -
Vvi16g871 728 Pfam PPR repeat family 491 539 IPR002885 -
Vvi16g871 728 Pfam PPR repeat family 62 110 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 64 97 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 530 562 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 196 228 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 330 356 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 495 527 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 301 327 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 364 386 IPR002885 -
Vvi16g871 728 TIGRFAM PPR: pentatricopeptide repeat domain 393 423 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g871 - - - vvi:100241523 1470.29
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g871 Blo06g01077 . . . . . . . . . Cma02g01103 . . . . Cpe05g00613 . . . . . . . . Cla01g00059 . . . . . . . . . . . Csa05g00067 Chy09g01423 . . . . Bda15g00777 . Bpe12g00374 . . . Cmo02g01130 . . . . . . . Bhi12g00617 . . . Hepe06g0775 . Lcy12g0117 . . . . . . . Lsi09g00038 . . Cme09g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004896 1 4 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 1 1 1 1 1 1 1 3 1 36